Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3589 318 1e-81 seq2074 307 2e-78 seq1824 307 2e-78 >seq3589 Length=27756 Score = 318 bits (352), Expect = 1e-81 Identities = 514/728 (71%), Gaps = 16/728 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| ||||||||||| ||||||||||| | |||||||| Sbjct 17299 CTCGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATG 17240 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| ||||||||| ||| |||||||||||||| ||||| |||||| Sbjct 17239 TCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAAC 17180 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | || ||||||| || || |||| Sbjct 17179 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAG 17120 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | |||||| ||||| ||||| | ||| | | ||||| || ||||| Sbjct 17119 GACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCC 17060 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||||| | ||| ||| |||| |||| |||| || || || || Sbjct 17059 ATGCGCTGGATCGAGGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCGTTCGCCTG 17004 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||| ||||| | ||| | ||||||||||||||||| | | | Sbjct 17003 CGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAG-AAACGCG 16945 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | ||||| || ||||| ||||| ||||| |||||| | | |||||||| ||||| Sbjct 16944 GCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACT 16885 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | |||||||| |||||||| | ||| | ||| | |||| ||||| || ||| Sbjct 16884 GCGACTTTGCGTGCCTCCTCT--ACGA-TCTTCTCCGCGTCAAG--CTCGACGAGTCGCG 16830 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | || || | || ||||| || || ||| |||||| || | |||| Sbjct 16829 CGTCCGCGAGATAGTCGCCGACGCCGTCGATATAGAGCGCGAGTTCGTCTGCGACGCGCT 16770 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||| | || |||||||||||| || |||||| | |||||||| ||| |||||| Sbjct 16769 CCCCTGCGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGC 16710 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 ||||| || || || | | |||||| || | |||||| | | ||| |||| Sbjct 16709 CGACCGCCTGCTCATGGC-GCTGGGTCACAAGAAGATGTACAACGTGGCCAACCCGTTCG 16651 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 ||| |||||| ||||| | |||||||||||||||| |||||||||||||||| || Sbjct 16650 ACTGGATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCG 16591 Query 43138 ACTACCAG 43145 | |||||| Sbjct 16590 AGTACCAG 16583 >seq2074 Length=58204 Score = 307 bits (340), Expect = 2e-78 Identities = 627/916 (68%), Gaps = 23/916 (3%) Strand=Plus/Minus Query 42240 GAGCCGCTCCTGGCGCCGAGCAACTCCAGGTTCACCCTGGACGTGATCGAGCACCAGGAC 42299 ||||||||||||||| | | | | | ||| || || | |||| || ||| | | Sbjct 22422 GAGCCGCTCCTGGCGGAGTCCTCCGACCGCTTCTCCATGTTCCCGATCAAGTACCCGCAG 22363 Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| | ||||||||||| | || |||||||||||||||| | ||||| Sbjct 22362 ATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCTGGACCGCCGAGGAGGTGGACCTC 22303 Query 42360 GCCAAGGACACGGCCGGC--TGGGA-GTCACTGTCT--GAGAACGAAAAGTTTTTCCTCA 42414 || ||| | |||| ||||| | | | || | | |||| ||| || Sbjct 22302 TCCGCCGACGTG--CGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCACTTCATCT 22245 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 || | || |||||||||||||| || |||||||| || ||||||||||| | Sbjct 22244 CCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCTGGCGTCGC 22185 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||||| || || ||| | ||||||||| ||||||||||||||||| |||| Sbjct 22184 GGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCGTTCTACGGCTTCCAGATCGCCA 22125 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | |||||| | ||||| ||| ||||| | ||||| | || ||||||| || || Sbjct 22124 TTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCG 22065 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 ||| || |||| ||| ||||| |||||| | ||| | | ||||| | Sbjct 22064 CGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTGCGCCGCAAGGCCG 22005 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 | ||| | | |||||||||| | ||| ||| |||| ||| | || || || Sbjct 22004 AGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGC----TTCGCAGAGCGTCTTGTCGCG 21949 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || || ||||||||||||||||||||||||| | ||| | ||||||||||||||||| Sbjct 21948 TTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCGCCATCTTCTGGCTCAAG 21889 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 | | | ||||| || ||||||||||| ||||| |||||| | | |||||||| Sbjct 21888 AAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 21829 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA-- 42891 ||||| | ||||| || ||||| || | ||| || |||| | |||| || || Sbjct 21828 CTGCACTGCGACTTCGCGTGCCTTCTCT--ACGA-CCTCCTCCGCGTCAAG--CTGGACG 21774 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 || || ||||| | ||| || | || ||||| || |||||| |||||| || Sbjct 21773 AGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCG 21714 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | |||| ||| | || |||||||||||| || || ||| || ||||| || ||| Sbjct 21713 ACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCTTATGAGCCAGTACGTCGAGT 21654 Query 43012 ACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTG 43069 ||||||||||| || || || | |||| | || | |||||| |||| Sbjct 21653 TCGTCGCCGACCGCCTGCTAATGGC-TTTGGGGCACAAGAAGATGTACAACGTCGCC-AA 21596 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 || ||||||| |||||| |||||| || |||| ||||||||||| ||||||||||| Sbjct 21595 TCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGACCAACTTCTTCGAGAAGCG 21536 Query 43130 CGTCGCCGACTACCAG 43145 ||||| ||| |||||| Sbjct 21535 CGTCGGCGAGTACCAG 21520 >seq1824 Length=71116 Score = 307 bits (340), Expect = 2e-78 Identities = 514/730 (70%), Gaps = 20/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| ||||||||||| ||||||||||| | |||||||| Sbjct 42118 CTAGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATG 42059 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| |||||||| ||| |||||||||||||| ||||| |||||| Sbjct 42058 TCCGACGTCCAGGTGGCCGAGGCGCGAGCCTTTTACGGCTTCCAGATCGCCATCGAGAAC 41999 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | ||||| | || ||||||| || || |||| Sbjct 41998 ATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAG 41939 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | |||||| ||||| ||||| | ||| | | ||||| || ||||| Sbjct 41938 GACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCC 41879 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||||| | || ||| |||| |||| |||| || || || || Sbjct 41878 ATGCGCTGGATCGAGGGCGGAGAGCGC----TTCGCCGAGCGGCTCGTCGCGTTCGCCTG 41823 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||| ||||| | ||| | ||||||||||||||||| | | | Sbjct 41822 CGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAG-AAACGCG 41764 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | ||||| || ||||| ||||| ||||| |||||| | | |||||||| ||||| Sbjct 41763 GCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACT 41704 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||||||||||||||| | ||| | ||| | |||| ||||| || ||| Sbjct 41703 GCGACTTTGCCTGCCTCCTCT--ACGA-CGTTCTCCGCGTCAAG--CTCGACGAGTCGCG 41649 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | || || | || ||||| || || ||| |||||| || | |||| Sbjct 41648 CGTCCGCGAGATAGTCGCCGACGCCGTCGACATAGAGCGCGAGTTCGTCTGCGACGCGCT 41589 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||| | || |||||||||||| || |||||| | |||||||| ||| |||||| Sbjct 41588 CCCCTGCGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGC 41529 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGT--GCCCCTT 43075 ||||| || || || | | |||| | || | |||| ||| ||| ||| || Sbjct 41528 CGACCGCCTGCTCATGGC-GCTGGGCCACAAAAAGATGTACA--ACGTCGTCAACCCGTT 41472 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| |||||| ||||| | |||||||||||||||| |||||||||||||||| Sbjct 41471 CGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGG 41412 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 41411 CGAGTACCAG 41402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944204301145280