Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1785 95.1 1e-14 seq132 91.5 1e-13 seq2976 86.0 5e-12 seq927 86.0 5e-12 seq267 86.0 5e-12 seq84 86.0 5e-12 seq6809 84.2 2e-11 seq1689 84.2 2e-11 seq1507 84.2 2e-11 seq951 84.2 2e-11 seq1203 82.4 6e-11 seq74 82.4 6e-11 >seq1785 Length=68507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||||||| || || || ||||||||| |||||||| || || Sbjct 64658 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC- 64600 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||| ||||| || || |||||||||||| || Sbjct 64599 AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGG 64540 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 64539 GATGCCCTCCTTGTCC 64524 >seq132 Length=289350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 148626 AGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 148567 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || || | ||||||||||| || |||||||||||||| ||| Sbjct 148566 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCC 148522 >seq2976 Length=39079 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || |||||| ||||||||| |||||||| || || Sbjct 26513 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 26454 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| ||| Sbjct 26453 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 26394 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 26393 ATGCCCTCCTTGTCC 26379 >seq927 Length=112269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || |||||||| || || || ||||||||| ||||||||||| || Sbjct 58450 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGC- 58392 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| ||| | || || | |||||||||||||| || || | |||||| ||| || Sbjct 58391 AAGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGG 58332 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 58331 GATGCCCTCCTTGTCC 58316 >seq267 Length=213022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| |||||||| ||| ||||||||||||||||| || Sbjct 31454 CCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 31513 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | | || ||||||||||| || ||||| ||||| | ||||| || || Sbjct 31514 AACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 31573 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 31574 ATGCCCTCCTTGTCC 31588 >seq84 Length=349560 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 21299 CCTCCCCTGAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC- 21241 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| |||| || | ||||||||||| || || || |||||||| || || Sbjct 21240 AAGGGTGCGCCCGTCCTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGAGG 21181 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 21180 GATGCCCTCCTTGTCC 21165 >seq6809 Length=3062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 ||||| || |||||||| ||| |||||||| ||||||||||||||||| ||| | Sbjct 2871 CGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCA 2930 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | ||||| |||||||| || || | ||||||||| Sbjct 2931 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATC 2971 >seq1689 Length=72926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCG 33972 ||||| || |||||||| ||| |||||||| ||||||||||||||||| ||| | Sbjct 1892 CGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCA 1951 Query 33973 TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | ||||| |||||||| || || | ||||||||| Sbjct 1952 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATC 1992 >seq1507 Length=80756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || || | || Sbjct 30605 AGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGG 30546 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || ||||| |||||||| ||| ||| | || ||| Sbjct 30545 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCC 30486 Query 34030 TTGTCC 34035 |||||| Sbjct 30485 TTGTCC 30480 >seq951 Length=113133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | ||| Sbjct 26794 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGC 26735 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| || || || ||||||||||| ||| ||| | || ||| Sbjct 26734 CCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 26675 Query 34030 TTGTCC 34035 |||||| Sbjct 26674 TTGTCC 26669 >seq1203 Length=97999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || |||| || Sbjct 47167 AGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 47108 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| ||||||||||| || ||||| |||||||| ||| Sbjct 47107 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCC 47063 >seq74 Length=368215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || | ||| ||||||||| |||||||| || |||| ||| Sbjct 24635 AGGCGCAGCACCAGGTGCACCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 24694 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| ||||| ||||| || || ||||||||||| ||| Sbjct 24695 TTGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 24739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397007097645256