Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3589 140 7e-28 seq1824 134 3e-26 seq2074 122 2e-22 >seq3589 Length=27756 Score = 140 bits (154), Expect = 7e-28 Identities = 306/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | ||||| || |||| Sbjct 17032 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 16973 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 16972 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 16913 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| ||||||||||| || ||| | || | ||| || | || || Sbjct 16912 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGTGC-CTCCTCTACGATCTTCT 16854 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | ||| || ||| | || || | || || || || | Sbjct 16853 CCGCGTCAAGCTCGACGAGTCG---CGCGTCCGCGAGATAGTCGCCGACGCCGTCGATAT 16797 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || || ||| | |||||||| | || ||| ||| | ||||||||| | || Sbjct 16796 AGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGGCATGAACGGCGTGCT 16737 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | |||| ||||| ||| | |||| Sbjct 16736 CATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGTCACAAGAA 16677 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| ||||| || | || |||||||| || || || || || || || Sbjct 16676 GATGTACAACGTGGCCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGAC 16617 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 16616 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 16584 >seq1824 Length=71116 Score = 134 bits (148), Expect = 3e-26 Identities = 305/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | ||||| || |||| Sbjct 41851 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 41792 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 41791 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 41732 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG--C 243466 ||||| ||||||||||| || ||| | || | || | || | | | | Sbjct 41731 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCCTGCCTCCTCTA--CGACGTTC 41674 Query 243467 TCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| |||||| || | ||| || ||| | || || | || || || || | Sbjct 41673 TCCGCGTCAAGCTCGACGAGTCG---CGCGTCCGCGAGATAGTCGCCGACGCCGTCGACA 41617 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || || ||| | |||||||| | || ||| ||| | ||||||||| | | Sbjct 41616 TAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGGCATGAACGGCGTGC 41557 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | | | Sbjct 41556 TCATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACAAAA 41497 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||||| | ||||| || | || |||||||| || || || || || || | Sbjct 41496 AGATGTACAACGTCGTCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGA 41437 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| ||||| ||| | || || || Sbjct 41436 CCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 41403 >seq2074 Length=58204 Score = 122 bits (134), Expect = 2e-22 Identities = 302/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || |||||||| ||||| | | ||||| || || || | || || || ||| Sbjct 21969 TTCGCAGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC 21910 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 21909 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAG 21850 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| |||||||||||||| ||| | |||| ||| ||| | || || Sbjct 21849 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGC-CTTCTCTACGACCTCCT 21791 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | || || ||| | ||| || | || || || || | Sbjct 21790 CCGCGTCAAGCTGGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 21734 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| || ||| | |||||||| |||| ||| || | ||||||||| | || Sbjct 21733 CGAGCGCGAGTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCT 21674 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | |||||| |||| ||||| ||||||||| | | || || | || | |||| Sbjct 21673 TATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCACAAGAA 21614 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | || || || | || ||||||||||| || || || || || || Sbjct 21613 GATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGAC 21554 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 21553 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 21521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102718514931800