Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1507 91.5 1e-13 seq5287 89.7 5e-13 seq2976 87.8 2e-12 seq3589 84.2 2e-11 seq927 82.4 7e-11 >seq1507 Length=80756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 30614 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 30555 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 30554 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 30495 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 30494 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 30436 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| ||||| || || || || || || || |||||| Sbjct 30435 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 30387 >seq5287 Length=9303 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 5409 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 5350 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 5349 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 5290 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 5289 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 5231 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| ||||| || || || || || || || ||||| Sbjct 5230 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 5183 >seq2976 Length=39079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||||||||| | | ||| || |||||||| || ||||| ||||| || || ||| Sbjct 26514 TCCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 26455 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | || ||||| ||| | || | || |||||||||||||| Sbjct 26454 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 26395 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| || ||||| | Sbjct 26394 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCA 26336 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || | || | || || || || || || || || || || |||||| Sbjct 26335 CCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 26286 >seq3589 Length=27756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 138380 GCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAG 138439 ||||||||||| | ||| | ||| |||||||| ||||| || |||||| || || || Sbjct 16871 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 16930 Query 138440 CCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaa 138499 |||||||||| ||| |||||| | |||||||| |||| |||||||| || Sbjct 16931 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAA 16990 Query 138500 aaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 | ||| ||||| ||||| || || | ||| |||| Sbjct 16991 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGC 17029 >seq927 Length=112269 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || ||| | ||| ||| || Sbjct 58205 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGCCCATCCTC 58146 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | || | |||||||||||||| || ||||| || || || || Sbjct 58145 CAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 58086 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | |||||| |||||||| || || || || | || || Sbjct 58085 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTT 58026 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 58025 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 57996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451938631342880