Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3095 237 2e-57 seq9 237 2e-57 seq2645 197 2e-45 seq1688 152 6e-32 seq748 147 3e-30 >seq3095 Length=35243 Score = 237 bits (262), Expect = 2e-57 Identities = 340/476 (71%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 8055 TAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAG 8114 |||| ||||| ||| |||||||| | ||| | | | ||| ||||||| || || | Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 8115 CAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTT 8174 |||| ||||| || ||||| ||| ||||| ||||||||||| |||||| || ||||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 8175 CCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGA 8234 |||||||||||||||| || | | ||| | | |||||| | | || || | Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 ||||||| || ||||| | ||||||||||| ||| || |||||||| || || |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGT 20033 Query 8295 GGAGACCAATAGCGTTAGAA----GAAGGAACAACAGCACCAGAG-----ATGATGTTGT 8345 | | || || || |||| | ||||| || ||||||||| || || |||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 8346 TGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAG 8405 | ||||| | | ||||||| || || ||||| || || ||||| || || ||||| | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 8406 CAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGG 8464 |||||| |||||||| || || ||| | || || | | | ||||| ||||||| Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAA 19854 Query 8465 ACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||||||||||| |||| || ||||| || | |||| |||| |||||| ||||| Sbjct 19853 ACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19798 >seq9 Length=772998 Score = 237 bits (262), Expect = 2e-57 Identities = 331/464 (71%), Gaps = 14/464 (3%) Strand=Plus/Plus Query 7957 ACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 || ||| || || | |||||| || || ||||| ||||||||||||||| | | ||| || Sbjct 515585 ACAAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 515644 Query 8017 AAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTG 8076 || ||| ||||||| |||||| |||| || | ||||||| | ||||||||| ||||| Sbjct 515645 AATCATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 515704 Query 8077 ACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||| | ||| || | | ||| ||||||| || || | ||| ||||| || | ||| || Sbjct 515705 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAAC 515764 Query 8137 ACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGC 8196 | ||||| ||| ||||||| |||| | || ||||||||||||||||||||| || Sbjct 515765 AGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACA 515824 Query 8197 ATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCA 8256 | | ||| | | |||||| | | || || | |||||||||| ||||| | ||| Sbjct 515825 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCA 515884 Query 8257 CTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGA 8316 ||||||||||| || |||||| || || || || || |||| | ||| Sbjct 515885 TTCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT------ 515933 Query 8317 AGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTC 8376 |||| || ||||||||||| || ||||| ||||| | | |||||| | || || Sbjct 515934 -GGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTC 515992 Query 8377 ACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGA 8420 | | || || ||||| || | ||| ||| |||| ||| |||| Sbjct 515993 ATGAATACCATCAATATCTATTGGA--AGCTGCGATGAAGGCGA 516034 >seq2645 Length=47068 Score = 197 bits (218), Expect = 2e-45 Identities = 280/390 (72%), Gaps = 3/390 (1%) Strand=Plus/Plus Query 8141 ATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG 8200 ||||| ||||||||||| |||||| || ||||||||||||||||||||| || | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 8201 ATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCA 8260 | ||| | | ||| || | | || || | |||||||||| ||||| | ||| ||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 8261 TCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGA 8320 |||| || || |||||||| || || || || || | || || | ||||| |||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 8321 ACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGG 8380 | || ||||||||||| || ||||| ||||| | || ||||||| || || ||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 8381 ATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGC 8439 || || ||||| || || ||||| || |||| ||| |||| || || ||| | || | Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 45712 Query 8440 AGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGT 8499 | | | ||||| ||||||| || || ||||| |||| || |||||||| | ||| Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 8500 GGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 | |||| |||||| ||||| || |||| Sbjct 45773 GCTAGTTATCCAGTTGCAGAAGTGACCCCA 45802 Score = 192 bits (212), Expect = 7e-44 Identities = 279/390 (72%), Gaps = 3/390 (1%) Strand=Plus/Minus Query 8141 ATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG 8200 ||||| ||||||||||| |||||| || ||||||||||||||||||||| || | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 8201 ATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCA 8260 | ||| | | ||| || | | || || | |||||||||| ||||| | ||| ||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 8261 TCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGA 8320 |||| || || |||||||| || || || || || | || || | ||||| |||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 8321 ACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGG 8380 | || |||||||||| || ||||| ||||| | || ||||||| || || ||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 8381 ATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGC 8439 || || ||||| || || ||||| || |||| ||| |||| || || ||| | || | Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 1113 Query 8440 AGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGT 8499 | | | ||||| ||||||| || || ||||| |||| || |||||||| | ||| Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 8500 GGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 | |||| |||||| ||||| || |||| Sbjct 1052 GCTAGTTATCCAGTTGCAGAAGTGACCCCA 1023 >seq1688 Length=72660 Score = 152 bits (168), Expect = 6e-32 Identities = 154/200 (77%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 7613 TCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAA 7672 || ||||| || |||| | |||||||| | ||||| | || |||||||| |||||| Sbjct 24675 TCAGCCCAAGTATTCATAAGGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAA 24734 Query 7673 CCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACT 7732 || || |||||||||||||| || |||| ||| | ||||||||||||||| || | || Sbjct 24735 CCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTATTACA 24794 Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || |||||||| | ||||| ||||||||||| ||| ||||||||| Sbjct 24795 GGCCAAGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 24851 Query 7793 ATCAGACGACCAAAGTATCC 7812 || | |||||||| || || Sbjct 24852 ATTAATCGACCAAAATAACC 24871 >seq748 Length=127770 Score = 147 bits (162), Expect = 3e-30 Identities = 157/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || |||| |||||||| || | | || | ||||||||| | |||| |||||| ||| Sbjct 126517 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 126576 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 ||||| || ||||| || || |||||||| || || | ||||| || || ||| | ||| Sbjct 126577 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 126635 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGC 8053 |||||||||| ||| ||||| |||| ||| ||||||| ||||||||||| || | || | Sbjct 126636 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 126695 Query 8054 ATAGCGTCAGAGAAAGAACCTTGACC 8079 ||| | | ||| ||| |||||||| Sbjct 126696 ATACCATTAGAAAAACTTCCTTGACC 126721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622035929472320