Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3589 183 5e-41 seq1824 167 4e-36 seq2074 136 6e-27 >seq3589 Length=27756 Score = 183 bits (202), Expect = 5e-41 Identities = 499/752 (66%), Gaps = 28/752 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 16601 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTT 16660 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||||| || |||| || || ||| |||| | ||| || || || || Sbjct 16661 GGCCACGTTGTACATCTTCTTGTGACCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 16720 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| || ||| || | | ||| || || | ||| ||||||||| || | Sbjct 16721 GATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCA 16780 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 16781 GACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGCG-GACGCGCGACTCGT 16839 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| | | | || | | |||||||||||||||||||||||||| | Sbjct 16840 ---CGAGCTTGACGCGGAGAAGATCGT---AGAGGAGGCACGCAAAGTCGCAGTGCAGAC 16893 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | ||||||||||||||| || || | Sbjct 16894 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTTTCT 16953 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| |||| || ||| ||||| ||||| ||| || ||| Sbjct 16954 TGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCGAAC 17012 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 17013 GCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGCCCACTC 17068 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | | ||| | |||| |||| | ||||| || Sbjct 17069 GGCC----TTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCTTCT 17124 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 17125 CGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 17184 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| ||| || |||||| ||| || || ||| Sbjct 17185 CGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCACCTGGACGTCGGACATGA 17244 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| ||| || |||||||| | |||| Sbjct 17245 ACC-GCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGGCGAAGAAAGCGAGCACG 17303 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||||| || | |||||| |||||| Sbjct 17304 TGGGAGATGAAGTGGCGCTCGTCGGGGTTGAG 17335 >seq1824 Length=71116 Score = 167 bits (184), Expect = 4e-36 Identities = 497/755 (66%), Gaps = 34/755 (5%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 41420 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTT 41479 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || ||| || || ||| |||| | ||| || || || || Sbjct 41480 GACGACGTTGTACATCTTTTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 41539 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| || ||| || | | ||| || || | ||| ||||||||| || | Sbjct 41540 GATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCA 41599 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 41600 GACGAACTCGCGCTCTATGTCGACGGCGTCGGCGACTATCTCGCG-GACGCGCGACTCGT 41658 Query 159885 ACCCCGGCTTGCCC---AAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 | ||||| | | || || || | |||||||| |||||||||||||||| Sbjct 41659 ---CGAGCTTGACGCGGAGAACGTCGT------AGAGGAGGCAGGCAAAGTCGCAGTGCA 41709 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||||| ||||||||| | ||||||||||||||| || || Sbjct 41710 GACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTT 41769 Query 160002 GTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| || |||| |||| |||| || ||| ||||| ||||| ||| || Sbjct 41770 TCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCG 41828 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCA 160119 ||||| ||||||| ||| | || ||| | | | | | |||| | ||||||| Sbjct 41829 AACGCGACGAGCCGCTCGGC----GAAGCGCTCTCCGCCCTCGATCCAGCGCATGGCCCA 41884 Query 160120 TTCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCT 160175 || ||| ||||| ||||||| | | ||| | |||| |||| | ||||| Sbjct 41885 CTCGGCC----TTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCT 41940 Query 160176 GCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACAT 160235 ||| | || ||| || | | |||| ||||||||| || | ||| | | Sbjct 41941 TCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGT 42000 Query 160236 TTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTG 160295 | |||||||| ||||| ||| ||| || | |||||| ||| || || Sbjct 42001 TCTCGATGGCGATCTGGAAGCCGTAAAAGGCTCGCGCCTCGGCCACCTGGACGTCGGACA 42060 Query 160296 TGAACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAAC 160354 |||||| ||| |||| || | || | ||||||| ||| || |||||||| | | Sbjct 42061 TGAACC-GCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGGCGAAGAAAGCTAGC 42119 Query 160355 ACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 ||||| | |||||| || | |||||| |||||| Sbjct 42120 ACGTGGGCGATGAAGTGGCGCTCGTCGGGGTTGAG 42154 >seq2074 Length=58204 Score = 136 bits (150), Expect = 6e-27 Identities = 522/806 (65%), Gaps = 28/806 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || ||| || ||||| | |||| || || Sbjct 21538 CTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGATT 21597 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || | |||| |||| | ||| || || || || Sbjct 21598 GGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCGGTCGGCGACGAACTC 21657 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 || ||| | ||| || | | ||| || || | || ||| ||||| || | Sbjct 21658 GACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCAGGGAAGCGCGTCGCA 21717 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 21718 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 21776 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 || ||||| | | | |||| | | || |||||||| |||||||||||||| | Sbjct 21777 ---CCAGCTTGACGCGGAGGAGGTCGT---AGAGAAGGCACGCGAAGTCGCAGTGCAGGC 21830 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||| ||||||| ||| || | Sbjct 21831 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCCGCGTTTCT 21890 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| || | | | | || ||||| ||||| ||| || ||| Sbjct 21891 TGAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAC 21949 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | ||| | || ||| | | | | | | |||| | ||| ||| || Sbjct 21950 GCGACAAGACGCTCTGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGTCCACTC 22005 Query 160123 AGCCTTCTTTGCGATGCACGGCATG---CG-CTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | || ||| | |||| || | | ||||| || Sbjct 22006 GGCC----TTGCGGCGCACGGCGGGGACCGTCTCTATGGCGCGGAAGAGCCGGTCCTTCT 22061 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 || | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 22062 CCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 22121 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 | ||||| ||||| ||| |||||| |||||| ||| || || ||| Sbjct 22122 CAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGCGACCTGGACGTCGGACATGA 22181 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| || || ||||| || | ||| Sbjct 22182 ACC-GCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAGAAGGCGAGAACG 22240 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||||| || | |||||| |||||| |||||||| |||||| | Sbjct 22241 TGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTCCCAGTGCCGCACGTCGGCG 22300 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCA 160443 | | || ||||| || ||| |||| Sbjct 22301 GAGAGGTCCACCTCCTCGGCGGTCCA 22326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795041612079680