Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1422 136 2e-26 seq763 129 2e-24 seq79 95.1 5e-14 seq2252 87.8 7e-12 seq201 87.8 7e-12 seq1689 86.0 2e-11 seq421 84.2 9e-11 >seq1422 Length=85827 Score = 136 bits (150), Expect = 2e-26 Identities = 207/294 (70%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 61388 GTTCTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGCAAATCTGTTTCAAAGGCT 61329 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| |||||||||||||||||||| || ||||| || || |||||||| Sbjct 61328 GTGATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAAGCCACAAAGGATGCAGGT 61269 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | ||||| |||| || |||||||| |||||||||||||| | Sbjct 61268 CGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTGTCT 61209 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 |||||| | ||| | || || || | |||| ||| |||||| |||| Sbjct 61208 TATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTTTTTGATCTTGGA 61161 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 ||||||||| ||||| ||| | || || | ||||||| ||||| ||| Sbjct 61160 GGAGGAACTTTTGATATCTCTATTCTGGAGATCTCAAATGGGGTTTTTGAGGTA 61107 >seq763 Length=128940 Score = 129 bits (142), Expect = 2e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| ||||| || ||| || ||||| | ||| | | || Sbjct 42315 GTTCTGACGAAGATGAAGGAAACTGCTGAATCTTACCTTGGTAAATCTGTTTCGAAGGCT 42256 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || ||||||||||| Sbjct 42255 GTGATTACTGTTCCAGCTTATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCAGGC 42196 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||||||| | |||| | |||||||||||||| || ||||||||||| | Sbjct 42195 CGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTGTCT 42136 Query 451445 TATGGA 451450 |||||| Sbjct 42135 TATGGA 42130 >seq79 Length=360181 Score = 95.1 bits (104), Expect = 5e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||||| || ||||||||| ||| |||| | || | | ||||| || Sbjct 309867 ACCAAGATGAAGGAGACAGCAGAAGCTTATCTTGGCAAATCTGTCTCAAAGGCAGTGGTT 309926 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || |||||||| ||||| || || ||||| || || |||||||| | ||| Sbjct 309927 ACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCCACAAAGGATGCAGGCCGCATT 309986 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | ||| | || || ||||| || |||||||||||| | | |||||| Sbjct 309987 GCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCAACAGCAGCTGCTTTGTCTTATGGA 310046 >seq2252 Length=53314 Score = 87.8 bits (96), Expect = 7e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 391138 TTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAAC 391197 |||| || ||||| || ||||| || || || ||| | | ||||| | || || ||| Sbjct 37883 TTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAAT 37824 Query 391198 TTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAG 391257 | |||||||||||||| || || |||||||| ||| | || || | ||||||||||| | Sbjct 37823 TGGAAGATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGG 37764 Query 391258 TATTAAGACTGAGAGG 391273 | | || || ||||| Sbjct 37763 TCCTGAGGCTCAGAGG 37748 >seq201 Length=241772 Score = 87.8 bits (96), Expect = 7e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| | ||||| |||| ||||| || |||||||||||| ||||| | |||||| | Sbjct 140132 TTACAAAAGCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAA 140073 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || | |||||| || | | |||||||| ||||| || ||||| || || | Sbjct 140072 AAGATGCTGGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTG 140013 Query 451434 C 451434 | Sbjct 140012 C 140012 >seq1689 Length=72926 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || |||||||||||||| ||||| || Sbjct 2334 ATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCA 2275 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || ||| || || || ||||| || || || || || || Sbjct 2274 GACACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAG 2215 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| ||||| || ||||| | || ||||| ||||| ||| Sbjct 2214 CAGCGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAAT 2155 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||| | || | | || |||||| Sbjct 2154 ATCCAGAAGGAGTCTACTCTTCACCTTGTCCTGCGCCTCAGAGGA 2110 >seq421 Length=177167 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391140 CAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTT 391199 || ||||||||||| |||||||| ||||| || ||||| || || | || || || || Sbjct 159347 CAGGATAAGGAAGGGATTCCTCCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTG 159406 Query 391200 GAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259 || |||||| | || |||| || || || ||| | ||||| | || || ||||| ||| Sbjct 159407 GAGGATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCGACTCTACACTTGGTA 159466 Query 391260 TTAAGACTGAGAGG 391273 | || || ||||| Sbjct 159467 CTCAGGCTCAGAGG 159480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975429112842224