Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq201 111 1e-18 seq22 107 1e-17 seq2715 105 5e-17 seq4465 102 6e-16 seq763 102 6e-16 seq1422 100 2e-15 seq3577 96.9 3e-14 seq2094 91.5 1e-12 seq1988 91.5 1e-12 seq1132 89.7 4e-12 >seq201 Length=241772 Score = 111 bits (122), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 ||||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 139933 TACATCAAAGGTACCACCTCCCAAATCAAACACTAGGA---TTGTTTCATTATTTT---T 139986 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 139987 CTTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTC 140046 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 140047 CAGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGC 140106 Query 518287 AGGAACAGTAATAACGGC 518304 ||||| |||| ||| || Sbjct 140107 TGGAACTGTAACAACTGC 140124 >seq22 Length=583761 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 190492 TTCTTGTCGAGACCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGCACA 190551 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| ||| ||||| || ||||| || || || || || || || || Sbjct 190552 TTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGCGAGTCATTGAAGTAG 190611 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || | ||| |||| Sbjct 190612 GCAGGAACTGTGACAACAGCAT 190633 >seq2715 Length=43111 Score = 105 bits (116), Expect = 5e-17 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 22122 ACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---TC 22069 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | | Sbjct 22068 TTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTCA 22009 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 22008 AGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGCT 21949 Query 518288 GGAACAGT 518295 ||||| || Sbjct 21948 GGAACTGT 21941 >seq4465 Length=15934 Score = 102 bits (112), Expect = 6e-16 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 518164 |||||| ||| || || || | ||||| || || |||||| | || | | ||| Sbjct 6822 ACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCGACACTGGAA 6763 Query 518165 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || || ||||||||||| |||| |||||||||||| || ||||| || || | | Sbjct 6762 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGG 6703 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||||||||| || ||||| || ||||| || || || || || || || Sbjct 6702 ACATTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAG 6643 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || |||||||| || | ||| || Sbjct 6642 TAGGCAGGAACTGTGACAACAGC 6620 >seq763 Length=128940 Score = 102 bits (112), Expect = 6e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 42131 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 42190 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | ||||||||||| ||||| || | || | ||| || ||||| || ||||||||| Sbjct 42191 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATAAGCTGGAACAGTA 42250 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || || || | | || |||||||| |||| Sbjct 42251 ATCACAGCCTTCGAAACAGATTTACCAAGGTAAG 42284 >seq1422 Length=85827 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 61204 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 61263 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | |||||||| || |||||||| | |||| ||| || ||||| || ||||||||| Sbjct 61264 ATCCGACCTGCATCCTTTGTGGCTTGACGCTGTGCATCATTGAAATAAGCTGGAACAGTA 61323 Query 518297 ATAACGGC 518304 || || || Sbjct 61324 ATCACAGC 61331 >seq3577 Length=27265 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||| |||||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 11594 CCATAGGACAGAGCTGCAGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 11535 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 11534 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 11475 Query 518297 ATAACGGC 518304 ||||| || Sbjct 11474 ATAACAGC 11467 >seq2094 Length=60286 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| |||| ||||||||||| |||||||| || || | || ||| Sbjct 34925 TTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATTATACGCATCACA 34984 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| || || || || ||||| || || || || ||||| || || Sbjct 34985 TTGAGGCCGGCAATGACACCAGCGTCCTTGGTGGCCTGCCTCTGCGAGTCGTTGAAGTAG 35044 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || | ||||| Sbjct 35045 GCAGGCACTGTTACCACGGC 35064 >seq1988 Length=62588 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 43335 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 43394 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 43395 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 43452 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 43453 TATCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 43512 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 43513 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 43572 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 43573 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 43632 Query 518151 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 43633 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 43692 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 43693 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 43752 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 | || || || ||||| || || || || || | ||||| Sbjct 43753 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACTACGGC 43792 >seq1132 Length=101899 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| | |||| ||| | |||||| | ||| |||| ||| | || ||| Sbjct 87190 GAATTTTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACAGCTGTGAAGACT 87131 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 |||| ||||| |||| ||| | | |||||| ||| | || || |||| || Sbjct 87130 TCTGAGACTGGCCATATCCAACGGAGACTTGTGAAAGCTATGGAGGACATCATGGTTAAA 87071 Query 671780 TATGATGGTACAGTAAGAAATGCA 671803 ||||||||||| ||||||||| || Sbjct 87070 TATGATGGTACTGTAAGAAATTCA 87047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780255304996168