Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2074 136 5e-27 seq1933 134 2e-26 seq3589 131 2e-25 seq58 131 2e-25 seq1824 129 7e-25 seq124 91.5 2e-13 seq2059 87.8 2e-12 >seq2074 Length=58204 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || || || Sbjct 21970 CTTCGCAGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 21911 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct 21910 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 21851 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 21850 GCTCATCTCCCGCGACGAGGGCCTGCAC 21823 >seq1933 Length=69095 Score = 134 bits (148), Expect = 2e-26 Identities = 273/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 52925 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 52866 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| || || |||||| | |||||||||||||||| |||||||| || || | Sbjct 52865 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 52808 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 52807 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 52748 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 16123 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 52747 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 52690 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 52689 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 52631 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 52630 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 52571 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 | || || ||| | || ||| ||||| ||||| Sbjct 52570 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 52534 >seq3589 Length=27756 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 17033 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 16974 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 16973 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 16914 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| ||||| || |||||||| || ||| || |||||| Sbjct 16913 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 16874 >seq58 Length=393800 Score = 131 bits (144), Expect = 2e-25 Identities = 258/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 351601 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 351660 Query 15948 ATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| || || || ||| | ||||||||||||||||| |||||||||||||| | Sbjct 351661 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 351719 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 16060 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 351720 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 351773 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 351774 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 351831 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 351832 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 351891 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 351892 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 351950 Query 16238 ACCCGTACCTGG 16249 ||| || || || Sbjct 351951 ACCGGTCCCAGG 351962 >seq1824 Length=71116 Score = 129 bits (142), Expect = 7e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 41852 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 41793 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 41792 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 41733 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| || |||||||| || ||| || ||||| Sbjct 41732 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 41694 >seq124 Length=296087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/327 (67%), Gaps = 22/327 (7%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || |||||||| |||| ||||||||||| || || |||| || || || | Sbjct 172559 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 172616 Query 16033 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 16086 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 172617 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 172672 Query 16087 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 172673 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 172728 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 172729 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 172788 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 172789 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 172848 Query 16263 AGGGCACCTCGT-GGAATCTTGGCGCC 16288 | |||| | | | || |||||||| || Sbjct 172849 A-GGCATCCCTTGGGGATCTTGGCTCC 172874 >seq2059 Length=61725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 211/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || ||||| || || | ||||||||||| || || |||| ||||| || | Sbjct 2239 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 2180 Query 16033 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 2179 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 2121 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 2120 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 2061 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 2060 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 2001 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 2000 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1941 Query 16272 CGTGGAATCTTGGCGCC 16288 ||| |||||||| || Sbjct 1940 TTTGGGATCTTGGCTCC 1924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620653726948160