Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq932 138 1e-27 seq1977 125 8e-24 seq1098 125 8e-24 seq4473 123 3e-23 seq2059 120 4e-22 seq3589 111 2e-19 seq1824 111 2e-19 seq124 109 6e-19 seq2074 105 8e-18 >seq932 Length=114357 Score = 138 bits (152), Expect = 1e-27 Identities = 317/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || ||| ||||| || ||| Sbjct 80384 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCGGGCCGGTTAGTGGCG 80325 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | | ||| | || |||| |||||||| ||||| || ||||||||| Sbjct 80324 GCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCTGTCAGCAGCTGGTTG 80265 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCG----AACGCTTCTTA 11676 | ||||| ||||||||||| || | ||||| ||||| |||| | | Sbjct 80264 AGTGTCTGCTCACGCTCATCATT------CCCCCCACCGATGCCGGTGCCGCGCTGCCTG 80211 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| ||||| |||||||| |||| ||||| |||||| |||| | | Sbjct 80210 CCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 80151 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||||| | ||| | | | Sbjct 80150 AACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCG-ACCC 80092 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 80091 GGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCTT 80032 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||||| || || | || || || |||| |||||| || || || | | Sbjct 80031 CCCCGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATTTTAGCCCCGATCGCCGT 79972 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| Sbjct 79971 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 79918 >seq1977 Length=64996 Score = 125 bits (138), Expect = 8e-24 Identities = 320/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 59536 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCG 59595 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | || | |||| |||||||| || || |||||||||||| Sbjct 59596 GCAAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTG 59655 Query 11623 ATCGTCTGTTCACGCTCATCGTTG---GAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| | || || | ||||| |||| | | ||| Sbjct 59656 AGCGTCTGCTCCCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCTCCCG 59712 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 59713 ACGGCGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 59772 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| || || || || ||||||||||| | ||| | ||| | | Sbjct 59773 AGGTCGCGCACCCGCGATGCGCCCACGCCGACGAACATCTCGATGAACT---CGGACCCG 59829 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | ||| || || | ||| || |||||||| || || || ||||| Sbjct 59830 GACAGCGAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTC 59889 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | || || || |||| ||||||||| || || | | | Sbjct 59890 CCGGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATCTTCGCGCCGATCGCGGTG 59949 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| |||| Sbjct 59950 AACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGCCTCGTCG 60009 Query 11977 A 11977 | Sbjct 60010 A 60010 >seq1098 Length=103461 Score = 125 bits (138), Expect = 8e-24 Identities = 320/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 79663 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCG 79604 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | || | |||| |||||||| || || |||||||||||| Sbjct 79603 GCAAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTG 79544 Query 11623 ATCGTCTGTTCACGCTCATCGTTG---GAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| |||||| | || || | ||||| |||| | | ||| Sbjct 79543 AGCGTCTGCTCCCGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCTCCCG 79487 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 79486 ACGGCGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 79427 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| ||| || || || ||||||||||| | ||| | ||| | | Sbjct 79426 AGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACT---CGGACCCG 79370 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | ||| || || | ||| || |||||||| || || || ||||| Sbjct 79369 GACAGCGAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGCAGCGTCTTC 79310 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | || || || |||| ||||||||| || || | | | Sbjct 79309 CCGGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATCTTCGCGCCGATCGCGGTG 79250 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||| || ||| | ||| | ||| ||||||| | |||| |||||| |||| Sbjct 79249 AACTTCTCCAGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTTCTTGGCCTCGTCG 79190 Query 11977 A 11977 | Sbjct 79189 A 79189 >seq4473 Length=16403 Score = 123 bits (136), Expect = 3e-23 Identities = 314/474 (66%), Gaps = 14/474 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| |||||| Sbjct 12544 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCCGGCCGGTTAGTAGCG 12603 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | | ||| | || |||| |||||||| || || || ||||||||| Sbjct 12604 GCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCCGTCAGCAGCTGGTTG 12663 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCG----AACGCTTCTTA 11676 | ||||| || |||||||| || | ||||| ||||| |||| | | Sbjct 12664 AGTGTCTGCTCCCGCTCATCATT------CCCCCCACCGATGCCGGTGCCGCGCTGCCTG 12717 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| ||||| |||||||| |||| ||||| |||||| |||| | | Sbjct 12718 CCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 12777 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||| | | ||| | | | Sbjct 12778 AACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCACGATGAACTCCG-ACCC 12836 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 12837 GGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCTT 12896 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||||| || || | || || || |||| |||||| || || || | | Sbjct 12897 CCCCGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATTTTAGCCCCGATCGCCGT 12956 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| Sbjct 12957 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 13010 >seq2059 Length=61725 Score = 120 bits (132), Expect = 4e-22 Identities = 257/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || ||||||||||| ||||| |||||||| || ||||| || | ||||||||| Sbjct 2237 AAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 2182 Query 11653 ATACCACCT-GCCGA-----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 |||||| ||| | ||||| | | |||||||| ||||||||||| ||||| || Sbjct 2181 --ACCACCGAGCCCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACA 2124 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||||| |||| ||||| || || | || | ||| || ||| Sbjct 2123 ATGCAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACA 2064 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || || || | ||| ||||| | | ||| | || | |||||| || | ||| Sbjct 2063 CCGACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCC 2004 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCG 11886 |||| || ||| || |||||||| || || || || ||||||| || |||| ||| Sbjct 2003 CCAGAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCAT 1944 Query 11887 CCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACA 11946 || ||||||||||| || | ||| || || ||||||||||| || || Sbjct 1943 CCCTTTGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCTGGGTTCTTGAGGAAATCGACG 1884 Query 11947 ATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 1883 ACCTCCTGCAGCTCGAGCTTGGC 1861 >seq3589 Length=27756 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || |||||||| || Sbjct 16887 TGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCG 16946 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || ||| ||| ||||||||||||||||| || ||| Sbjct 16947 CGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAG 17006 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 17007 GCGAACGCGACGAGCCGCTCGGCGAA 17032 >seq1824 Length=71116 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || ||| || || Sbjct 41693 GGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCC 41752 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | |||||| ||||| |||||||| || ||| ||| ||||||||||| Sbjct 41753 CGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGAT 41812 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 |||||| || |||||||| |||| || ||||| || || Sbjct 41813 GCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA 41851 >seq124 Length=296087 Score = 109 bits (120), Expect = 6e-19 Identities = 254/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || |||||||| || || || |||||||| || ||||| || | ||| ||||| | Sbjct 172561 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTC----C 172616 Query 11653 AT-ACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 | |||| || || ||||| | | || || ||||| |||||||| ||||| || || Sbjct 172617 ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGACAAT 172676 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||||| ||||| |||| ||||| || || | || | || || ||||| Sbjct 172677 GCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGACACC 172736 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 || || | ||| ||||| | | ||||| || | |||||| || | ||| || Sbjct 172737 GACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCC 172796 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || || |||||||| ||||| || ||||| | || |||| ||| || Sbjct 172797 GGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGCATCC 172856 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||||||||| || | ||| || || ||||||||||| || || | Sbjct 172857 CTTGGGGATCTTGGCTCCGAGCGCGGTGTACTTATCGGGATTCTTGAGGAAATCGACTAC 172916 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||||| || || |||||| Sbjct 172917 CTCCTGCAGCTCGAGCTTGGC 172937 >seq2074 Length=58204 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 21824 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCCG 21883 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 21884 CGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCAG 21943 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| |||||||| || || Sbjct 21944 GCGAACGCGACAAGACGCTCTGCGAA 21969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588891864778400