Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1933 138 1e-27 seq2074 118 1e-21 seq58 118 1e-21 seq1824 113 5e-20 seq3589 111 2e-19 seq124 104 3e-17 seq2059 91.5 2e-13 seq234 84.2 3e-11 seq209 84.2 3e-11 >seq1933 Length=69095 Score = 138 bits (152), Expect = 1e-27 Identities = 265/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 52925 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 52866 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || |||| || || |||||| | |||||||||||||||| ||||||||||| || | Sbjct 52865 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 52808 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 52807 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 52748 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || || || || || ||| || ||| | | ||| |||| Sbjct 52747 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGCCTTCTTAAACAGAT 52688 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | || |||| ||| || ||||| ||||||||||||||||| | | | | | || Sbjct 52687 CACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATATA 52629 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| || Sbjct 52628 GAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAGTC 52569 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| | || ||| |||| Sbjct 52568 CCAGGAGGACCAACAAGCAGGACACC 52543 >seq2074 Length=58204 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| |||||||||||||| || Sbjct 21823 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTGGCATGAGCCC 21882 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 21883 GCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGCA 21942 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | ||| ||||| |||||| Sbjct 21943 GGCGAACGCGACAAGACGCTCTGCGAAG 21970 >seq58 Length=393800 Score = 118 bits (130), Expect = 1e-21 Identities = 252/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 351601 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 351660 Query 9255 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 351661 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 351719 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9367 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 351720 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 351773 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 || |||||||| ||||||| || || || || ||| ||| || ||| | | ||| Sbjct 351774 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTTCTTAAA 351833 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||||| || || | || || ||||| |||||||||||||| || | | | | | Sbjct 351834 CAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCCG- 351892 Query 9488 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 | || | || ||| || || || ||| || ||||| || ||| || | |||||||| Sbjct 351893 ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTAC 351952 Query 9547 CCGTACCTGG 9556 | || || || Sbjct 351953 CGGTCCCAGG 351962 >seq1824 Length=71116 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 41693 GGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCC 41752 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || || ||||| | ||| | || |||||||| || || || |||||||| Sbjct 41753 CGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGAT 41812 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||||| || || || ||||| | || |||||||||||| Sbjct 41813 GCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 41852 >seq3589 Length=27756 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 16875 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCC 16934 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || || ||||| | ||| | || |||||||| || || || |||||||| Sbjct 16935 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATG 16994 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||||| || || || ||||| | || |||||||||||| Sbjct 16995 CCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 17033 >seq124 Length=296087 Score = 104 bits (114), Expect = 3e-17 Identities = 218/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Plus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| || |||||||| |||| || |||||||| || || |||| || || || | Sbjct 172559 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 172616 Query 9340 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9393 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 172617 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 172672 Query 9394 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||| || || || | ||| | || ||||| || | ||||| || || | Sbjct 172673 CAATGCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGA 172732 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| ||||| | ||| || || | | ||| | || || |||||| || | | Sbjct 172733 CACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCT 172792 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573 | || || | ||| || || || ||||| ||||| || || ||| ||| |||||| || Sbjct 172793 CCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGA-GG 172851 Query 9574 CACCCCGT-GGAATCTTGGCGCC 9595 || ||| | || |||||||| || Sbjct 172852 CATCCCTTGGGGATCTTGGCTCC 172874 >seq2059 Length=61725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| || ||||| || || | || |||||||| || || |||| ||||| || | Sbjct 2239 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 2180 Query 9340 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | ||||||| || ||| | || || |||||||||||||||||||||||||| Sbjct 2179 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 2121 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || | || | || ||||| || | ||||| || || ||||| Sbjct 2120 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 2061 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 2060 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 2001 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | | ||| |||||||| || || || || || || || || |||||||| ||| Sbjct 2000 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1941 Query 9579 CGTGGAATCTTGGCGCC 9595 ||| |||||||| || Sbjct 1940 TTTGGGATCTTGGCTCC 1924 >seq234 Length=229189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6951 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7010 ||||| | |||||| || || ||| |||| |||||| ||||| | | | ||||| || Sbjct 188519 CCACAGAGCGAGGACACGCCGTTCCACCCGCGCTCGCCCTACGCCGCCGCCAAGGTCGCC 188460 Query 7011 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7070 || || ||| | | || ||||| ||| | ||||| || || || ||| ||| | Sbjct 188459 GCGCACTGGTACACCGTCAACTACCGAGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTG 188400 Query 7071 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCAC 7114 ||||||||||| || |||||| | || |||| |||| ||||| Sbjct 188399 CTCTTCAACCACGAGTCACCGCGCCGCGGTGAGAACTTCGTCAC 188356 >seq209 Length=235896 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 || ||| || || || |||||||||||||| || ||||||| || || | ||| | Sbjct 51146 CACCTGGGGCCTGGGAGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCG 51205 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 || |||||| | |||||| | | | |||| |||||||| ||| ||| || || | Sbjct 51206 CTGAGACATCAGATGGTATGTTTTGATGGCAGATTCAATGTCATCCTTGTGTATCCCCAC 51265 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 | || | ||| ||||||| ||| ||| |||| | | | ||| | ||| || ||| Sbjct 51266 TGAAACTCTCATTAACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGC--TTCAAG 51323 Query 107344 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || | |||| || || |||| |||||||| || |||| |||||| Sbjct 51324 AGGTAAGACCTCTCCAGAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCC 51375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589896521242720