Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3095 205 1e-47 seq9 201 1e-46 seq2645 185 1e-41 seq1688 141 1e-28 seq748 120 4e-22 seq1305 89.7 6e-13 seq3349 87.8 2e-12 >seq3095 Length=35243 Score = 205 bits (226), Expect = 1e-47 Identities = 331/470 (70%), Gaps = 17/470 (4%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| ||| | ||||| || || |||| ||||| Sbjct 19788 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 19847 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 ||| ||| ||||||| || || | ||| | |||||| |||| || || |||| |||| Sbjct 19848 CGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCA 19906 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 ||||||| || || || || || ||||| || ||||| || || ||||||| | | | Sbjct 19907 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 19966 Query 179917 ATGGTAACA-----ACATCATCTCTGGTGCAGTTGTT----CCTTCTTCCAACGCAATTG 179967 |||| |||| | || ||||||||||| || || ||| |||| || || | Sbjct 19967 ATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCG 20026 Query 179968 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTG 180027 | | ||||| || | ||||||||| ||||| |||| |||||| | || || || | Sbjct 20027 GATTGCACTTTTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 20082 Query 180028 GTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTG 180087 |||||| | || | || | |||||| | |||| | | || |||||||||| Sbjct 20083 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 20142 Query 180088 AGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCT 180146 ||||||||||| || || |||||||||| || ||||| ||| || |||||||| ||| Sbjct 20143 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCT 20201 Query 180147 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGG 180196 || || || || || ||||||| ||| | | | ||| | |||||||| Sbjct 20202 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq9 Length=772998 Score = 201 bits (222), Expect = 1e-46 Identities = 323/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Minus Query 179848 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTT 179907 ||||||||||||| ||| || | || || ||||| || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 179908 CACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTG 179967 | | | ||||| ||||| || ||||||||||| | || ||||||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAACTCGATTG 515924 Query 179968 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTG 180027 || || || || || |||||| ||||| ||||| || ||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 180028 GTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTG 180087 |||||| | || | || | |||||| | |||| | | || |||||||||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 180088 AGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCT 180146 ||||||||||| || | ||||||||| || ||||| ||| || ||| |||| ||| Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCT 515750 Query 180147 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCT 180206 || || | || || ||||||| ||| | | || ||| | |||||||| |||||| Sbjct 515749 CCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 515690 Query 180207 GACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAG 180266 || | ||||| | || || | ||| || ||||||| ||| |||| ||| | | |||| Sbjct 515689 GATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAG 515630 Query 180267 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGC 180307 ||||||||||| ||||| || || |||||| | || ||||| Sbjct 515629 CACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 185 bits (204), Expect = 1e-41 Identities = 278/391 (71%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | |||||||| | ||| |||| ||| | || || || || |||| ||||| Sbjct 45803 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 45744 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | ||||| |||| || || ||||||||| Sbjct 45743 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 45685 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 |||| || || || || || || ||||| || ||||| || || ||||||| || | | Sbjct 45684 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 45626 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 |||| ||||| || ||||||||||| || ||||| |||| | || || | || | Sbjct 45625 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 45566 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | || || || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 45565 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 45506 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 | || | || | || ||| | |||| | | || ||||||||||||||||||| Sbjct 45505 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 45446 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGAT 180127 || || || |||||||||| || ||||| Sbjct 45445 TTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 181 bits (200), Expect = 1e-40 Identities = 277/391 (71%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | |||||||| | ||| |||| ||| | || || || || |||| ||||| Sbjct 1022 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 1081 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 || ||| ||||||| || || | ||| | ||||| |||| || || ||||||||| Sbjct 1082 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 1140 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 |||| || || || || || || ||||| || ||||| || || ||||||| || | | Sbjct 1141 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 1199 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 |||| ||||| || |||||||||| || ||||| |||| | || || | || | Sbjct 1200 ATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 1259 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | || || || |||||||| ||||| |||| || ||| | || || |||||||||| Sbjct 1260 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 1319 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 | || | || | || ||| | |||| | | || ||||||||||||||||||| Sbjct 1320 AGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 1379 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGAT 180127 || || || |||||||||| || ||||| Sbjct 1380 TTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 141 bits (156), Expect = 1e-28 Identities = 153/202 (76%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 180454 ATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTC 180513 |||| || || ||||| | |||||||| ||||| ||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 180514 ACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 180573 ||||||| ||| || |||||||| | || |||||||||||||| | || | || | Sbjct 24813 ACTTCTT---GGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 180574 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTC 180633 | |||||||||||||| || |||||||| |||||||| || | ||||| | ||||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 180634 GTGTGCTCAACACTTGGGCAGA 180655 | | | || |||||||| || Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 120 bits (132), Expect = 4e-22 Identities = 151/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 180189 GGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATG 180248 |||||||| || ||| | | ||| | | || || ||||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 180249 CTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCA 180308 |||| ||||| ||| ||||||||||||| | ||| || || ||||| | || ||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 180309 GGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTG 180368 ||||| ||||||||||| || ||| || ||||| |||| |||| |||||| || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 180369 GTTCGTGAAACCACTGAAACTGAGTC 180394 | | || |||||||||||||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 >seq1305 Length=91268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 171942 CCATATTCCTGCCGTGCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACG 172001 ||||| || |||||||| || || ||||||| |||||||| ||| ||||| ||| | Sbjct 28326 CCATACTCATGCCGTGCTGGGGCTTGTTCCACATGTGCTGGCAAAATTGAGGTTGGCGAG 28385 Query 172002 GTAGATCAGTCAGAGCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTG 172061 |||||||||||||| ||| || |||||||||| || || | ||| | || ||| Sbjct 28386 GTAGATCAGTCAGATGGATCCTTTCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTG 28445 Query 172062 ACCTGTGTTGCTTATCCTA 172080 || ||||| | || |||| Sbjct 28446 ACTTGTGTGTCATACCCTA 28464 >seq3349 Length=30989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 25091 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 25150 Query 141314 CCTACCTGGGGAG-TCAT 141330 ||||| ||||||| |||| Sbjct 25151 CCTACTTGGGGAGATCAT 25168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610309604817120