Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9 221 1e-52 seq3095 152 6e-32 seq2645 141 1e-28 seq748 111 2e-19 seq1688 107 2e-18 >seq9 Length=772998 Score = 221 bits (244), Expect = 1e-52 Identities = 291/404 (72%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 |||||||| | ||||| ||||| || ||||||||||| || ||||| | Sbjct 515980 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAAC---------- 515931 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 ||| | | || || |||||||| |||||| ||| || ||||||||||||| || ||| Sbjct 515930 -TCG-ATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 515873 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 |||||||||||| || | | | | |||||| | ||||| | | || ||||| Sbjct 515872 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 515813 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 | |||||||||| | | | | || |||| ||||||||| ||||||| | || Sbjct 515812 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 515753 Query 169798 GCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTC 169857 || || || || ||||| ||||| ||||| | ||||| ||||||| || ||| Sbjct 515752 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 515693 Query 169858 TCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCA 169917 |||||||||||||| |||| |||| |||||||||||||||||| | || ||| | | | Sbjct 515692 TCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 515633 Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961 ||||| ||||| || |||||||| || |||||| ||| ||||| Sbjct 515632 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 152 bits (168), Expect = 6e-32 Identities = 296/434 (68%), Gaps = 15/434 (3%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 19840 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 19898 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | ||||| Sbjct 19899 CGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 19958 Query 169563 TTTCTTGTATGGTAACAACATCAT-----CTCTGGTGCAGTTGTTCCATCATCAAAC--- 169614 ||| | ||||| ||||| || || ||||||||| || |||| | | | Sbjct 19959 TTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGC 20018 Query 169615 -GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTA 169673 || |||||| | ||||| ||||| |||||||| ||| |||||||||| ||||| || Sbjct 20019 GGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATA 20074 Query 169674 TAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACAT 169733 ||||| ||||||||| || | | | | |||||| | ||||| | | || || Sbjct 20075 CAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATAT 20134 Query 169734 GGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATA 169793 ||| | |||||||||| | | | | || |||||||||||||| ||||||||| Sbjct 20135 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 20194 Query 169794 CTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTC 169853 || || || || | ||||| ||||| ||||| | |||| ||||||| || Sbjct 20195 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAG 20254 Query 169854 ATTCTCTGATGGTA 169867 || ||||||| || Sbjct 20255 TTTTTCTGATGCTA 20268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || ||||||||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGG----TGGTTGGTTCTTAGGGACTAC 170644 || || || | |||||||| || | | | || ||||||||| ||||||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 170645 CTTCGTTACATCATGGTATACACATGG 170671 || || || || |||||||| ||||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGG 21200 >seq2645 Length=47068 Score = 141 bits (156), Expect = 1e-28 Identities = 237/339 (70%), Gaps = 3/339 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||||||| ||| | ||||| || |||| | || || | | ||| || || | Sbjct 45751 GGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACTTC-TGTATTTATTAT 45693 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| ||||| ||||| || ||||| || || || | || || || | ||||| Sbjct 45692 CGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 45634 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | ||||| ||||| || ||||||||||| || |||| | || | ||||| Sbjct 45633 TCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGG 45574 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | || || |||||||| |||||||| ||| | ||||||||||||| || |||||||| Sbjct 45573 ATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGG 45514 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | || ||| | ||||| | | || ||||| | | Sbjct 45513 TCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 45454 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGAT 169781 ||||||||| | | | | || |||||||||||||| Sbjct 45453 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 136 bits (150), Expect = 5e-27 Identities = 236/339 (70%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||||||| ||| | ||||| || |||| | || || | | ||| || || | Sbjct 1074 GGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACAACTTC-TGTATTTATTAT 1132 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| ||||| ||||| || ||||| || || || | || || || | ||||| Sbjct 1133 CGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 1191 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | ||||| ||||| || |||||||||| || |||| | || | ||||| Sbjct 1192 TCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGG 1251 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | || || |||||||| |||||||| ||| | ||||||||||||| || |||||||| Sbjct 1252 ATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGG 1311 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | || ||| | ||||| | | || ||||| | | Sbjct 1312 TCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 1371 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGAT 169781 ||||||||| | | | | || |||||||||||||| Sbjct 1372 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 111 bits (122), Expect = 2e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 169834 TACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTC 169893 ||||| |||||| || || ||| |||||||| | |||| ||||| ||||||||| Sbjct 126730 TACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTC 126671 Query 169894 AACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCA 169953 ||||||||| | || ||||| ||| |||| ||||| || | |||||| || ||||| | Sbjct 126670 AACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTA 126611 Query 169954 GGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTA 170011 || ||||| || | ||||| || || ||||| || |||||| |||| |||| || Sbjct 126610 GGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTC-CTTGGTA 126555 >seq1688 Length=72660 Score = 107 bits (118), Expect = 2e-18 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 170110 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACAC 170169 ||||| |||||||| | |||||||| |||||| ||||||||||| | | ||||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 170170 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACA 170229 ||||| || | || ||||| || | | ||||| || || | ||||| | || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 170230 ATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 |||||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579130059451520