Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq3095 205 1e-47 seq9 183 3e-41 seq2645 172 6e-38 seq1688 140 4e-28 seq748 105 8e-18 >seq3095 Length=35243 Score = 205 bits (226), Expect = 1e-47 Identities = 334/475 (70%), Gaps = 17/475 (4%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| | ||| |||| | || | || ||||| || || |||| |||||||| || | Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| || || ||||||| | | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 168041 ACATCAT-----CTCTGGTGCAGTTGTCCCTTC----TTCTAATGCTATTGGACTTCACT 168091 | || || ||||||||| || | ||| | |||| || || ||| | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 168092 TCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCC 168151 | || || |||||||| ||||| | ||||||||||| || || || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 168152 AACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAAC 168211 | ||| | || | |||||| | | ||| | | || ||||| ||||| ||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 168212 TTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTG 168271 || | ||| | ||||||||||| ||||| ||||||||| || || || || || | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 168272 CAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGC 168326 | || | ||| || ||| | | | ||| | |||||||| ||||| |||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq9 Length=772998 Score = 183 bits (202), Expect = 3e-41 Identities = 331/480 (69%), Gaps = 17/480 (4%) Strand=Plus/Minus Query 167945 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCC 168004 ||||| || ||| || |||||||| |||| ||| || | || || || || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 515995 Query 168005 GTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCC 168064 ||| || | |||||| | | ||||| ||||| || ||||||||||| | Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------C 515942 Query 168065 CTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATG 168124 || ||| || | |||| || || || || || |||||| ||||| || |||| Sbjct 515941 ATTTTTCCAACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 168125 AGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCT 168184 | ||||| || || |||||||||| | ||| | || | |||||| | | ||| | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 168185 ATGCATACATGGGACGTGAATGGGAACTTTCATATC-GTTTAGGTATGCGTCCATGGATC 168243 | || ||||| ||||| ||||||||| || || || | ||||||| ||| ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATCCTTGGATT 515768 Query 168244 TGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTC 168303 ||||||| | || || || || | || || | ||| || ||| | | || ||| | Sbjct 515767 GCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 515708 Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||||||||||||| ||||| | ||||||| || || ||||||| ||| Sbjct 515707 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATG 515648 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||| | | |||||||| || || |||||||| || || ||| | || || ||| Sbjct 515647 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq2645 Length=47068 Score = 172 bits (190), Expect = 6e-38 Identities = 269/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||| | ||| |||| || | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || ||||||||||| || | ||| ||||| | || ||| | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| |||||| | ||||| ||||| || || |||||||||| | ||| | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | || ||| | | ||| | | || ||||| ||||| ||||||||| | || Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 168222 TTTAGGTATGCGTCCATGGAT 168242 | | ||||||||||| ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 167 bits (184), Expect = 3e-36 Identities = 268/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||| | ||| |||| || | || || || || |||| ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || ||||| || || ||||||| || | ||||| ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || |||||||||| || | ||| ||||| | || ||| | || || || || || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| |||||| | ||||| ||||| || || |||||||||| | ||| | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | || ||| | | ||| | | || ||||| ||||| ||||||||| | || Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 168222 TTTAGGTATGCGTCCATGGAT 168242 | | ||||||||||| ||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 140 bits (154), Expect = 4e-28 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 168569 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 168628 ||||||| || ||||| || ||||||||||| ||| ||||||||||| || || || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 168629 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 168688 ||||||| ||||| |||||||| | || ||||||||||| || | || | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 168689 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 168748 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 168749 GTGTGTTGAACACCTGGGCAGAT 168771 | | |||| || ||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 105 bits (116), Expect = 8e-18 Identities = 149/208 (72%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||||| ||| ||| ||| | | |||||||| || || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||||| || ||||||| || || | |||||| || || || | || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 168424 GGGGTATTTGGTGGCAGTT--TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTC 168481 || ||||| || || || | || ||||||||||| | ||||| || ||| | Sbjct 126601 GGTGTATTCGGCGG---TTCCTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTT 126545 Query 168482 TCGTTAGAGAGACGACTGAAACCGAATC 168509 | | || ||||| |||||||| ||||| Sbjct 126544 TGCTCAGGGAGACCACTGAAACTGAATC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574391536446240