Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq9 232 7e-56 seq3095 228 9e-55 seq2645 214 2e-50 seq1688 143 3e-29 seq748 116 4e-21 >seq9 Length=772998 Score = 232 bits (256), Expect = 7e-56 Identities = 328/461 (71%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 163885 TCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTT 163944 |||||||| |||| ||| || | || || |||||||||| ||| ||| || |||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 163945 CGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTG 164004 | | | ||||| ||||| || ||||||||||| || |||| || | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 515924 Query 164005 GTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTG 164064 || || ||||| ||| |||||| ||||| |||||||||||| | ||||| |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 164065 GTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTG 164124 |||||| | || | || | |||||| | | ||| | | || |||||||||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 164125 AGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCAC 164184 |||||||||| || | |||| ||||||| |||||||||| |||||| | || || | Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 164185 CCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTG 164244 | ||| |||| || | || || ||| || | || ||| | |||||||| ||||||| Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 164245 ACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGC 164304 | | ||||| | || |||| ||| || ||||||| ||| | || ||| | | ||||| Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 164305 ACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 164345 |||||||||| ||||| || || || ||| | || || ||| Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 228 bits (252), Expect = 9e-55 Identities = 331/460 (72%), Gaps = 17/460 (4%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||| ||| ||||||| | Sbjct 19858 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 163963 ACATCAT-----CTCTGGTGCAGTTGTTCC---CT-CGTCCAATGCAATTGGTCTTCACT 164013 | || || ||||||||| || |||| || | || || || || | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 164014 TCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCC 164073 | ||||| |||||||| ||||| ||||||| ||| | ||||| || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 164074 AACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAAC 164133 | || | || | |||||| | | ||| | | || ||||||||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 164134 TGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAG 164193 | || |||||| |||||||||||||||||| |||||| || || || || ||||||| Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 164194 CAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGG 164233 | || | || || ||| || | | ||| | |||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || |||||||||||| | || ||||| || || | || ||| Sbjct 21334 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21275 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCT----TACTGGGACTACTTTCGCGACGAG 165321 || ||||||| | ||| | || |||||| | ||| ||||||||||| | || Sbjct 21274 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTACTTTTGTAACTTC 21215 Query 165322 TTGGTATACTCACGGGTTGGCAAGTTCCTA 165351 ||||||||| || || ||||| |||||||| Sbjct 21214 TTGGTATACCCATGGATTGGCTAGTTCCTA 21185 >seq2645 Length=47068 Score = 214 bits (236), Expect = 2e-50 Identities = 281/383 (73%), Gaps = 5/383 (1%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | || || || || | || ||||| || ||| || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 163845 ATGATCCCTACGCTGCTTGCAGCA-ACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | || | | ||||| || || |||||||| |||| || | Sbjct 45733 ATGATCCCTAC-CTTATTG-ACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-C 45677 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| || | ||||| |||| Sbjct 45676 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 45617 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || | || || | || || ||||| | Sbjct 45616 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 45557 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||||||| | ||||| |||||||||| | || | | Sbjct 45556 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 45497 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | || ||| | | ||| | | || |||||||||||||||||||| || || Sbjct 45496 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 164143 GTCTTGGTATGCGTCCTTGGATT 164165 |||| |||||||||||||||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGATT 45414 Score = 208 bits (230), Expect = 8e-49 Identities = 280/383 (73%), Gaps = 5/383 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | || || || || | || ||||| || ||| || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 163845 ATGATCCCTACGCTGCTTGCAGCA-ACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | || | | ||||| || || |||||||| |||| || | Sbjct 1092 ATGATCCCTAC-CTTATTG-ACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-C 1148 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| || | ||||| |||| Sbjct 1149 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 1208 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || |||||||||| || |||| | || | || || | || || ||||| | Sbjct 1209 ATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 1268 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||||||| | ||||| |||||||||| | || | | Sbjct 1269 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 1328 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | || ||| | | ||| | | || |||||||||||||||||||| || || Sbjct 1329 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 164143 GTCTTGGTATGCGTCCTTGGATT 164165 |||| |||||||||||||||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 143 bits (158), Expect = 3e-29 Identities = 152/200 (76%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||| |||||||| | ||||||||||| ||| ||||||||||| ||||| || ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 ||||| ||||| |||||||| | || ||||||||||| || | ||| || || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 164613 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164672 |||||||||||||| || |||||||| |||||||| || | | ||| | || ||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 164673 GTGCTCAACACTTGGGCAGA 164692 | | || |||||||| || Sbjct 24694 CTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 116 bits (128), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 164226 GGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATG 164285 |||||||| || ||| | | ||| | | || |||||||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 164286 TTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 164345 | || ||||| ||| ||||||||||||| | ||| || || || || | || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 164346 GGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTG 164405 || ||||| |||||||| || |||||||| ||||| |||| |||| || ||| || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 164406 GTTCGTGAAACCACCGAAACTGAGTC 164431 | | || ||||| |||||||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845243292320