Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq9 208 9e-49 seq3095 172 6e-38 seq2645 154 2e-32 seq1688 93.3 5e-14 >seq9 Length=772998 Score = 208 bits (230), Expect = 9e-49 Identities = 288/404 (71%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 168647 GGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCA 168706 ||| || || | ||||||||||| || ||||| ||||| || ||||| || Sbjct 515980 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT--------- 515930 Query 168707 ATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAAT 168766 || | | || || ||||||||| |||||| || | | ||||| |||||||| ||| Sbjct 515929 --CGAT-TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 515873 Query 168767 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGT 168826 ||||||||||| || | | | | |||||| || | || | || || |||||| Sbjct 515872 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 515813 Query 168827 AGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCA 168886 | |||||||| | | | | || |||||| |||||||| |||||| ||||| Sbjct 515812 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 515753 Query 168887 GCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTC 168946 || || || || || || ||| || ||| | | ||||| ||||||| || |||| Sbjct 515752 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 515693 Query 168947 TCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 ||||||||||||||| ||||||| | ||| || |||||||| ||| | |||||| | | | Sbjct 515692 TCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 515633 Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGC 169050 ||||||||||| ||||||||||| || || ||| ||| ||||| Sbjct 515632 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 172 bits (190), Expect = 6e-38 Identities = 335/490 (68%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACA- 168668 || || ||||| || || || | || ||||| | ||| || || | |||||||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 168669 ----ACATCATCTCAGGTGCAGTTGTT----CCATCTTCAAACGCAATCGGTCTACACTT 168720 | || ||||| ||||| || || || |||| || ||||| | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 168721 CTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCA 168780 ||||| |||||||| || | | |||||||||||||| ||||| |||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 168781 GTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATT 168840 | | | | | |||||| || | || | || || |||||| | |||||||| | Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 168841 ATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGC 168900 | | | || |||||| | |||||||| |||||| |||||||| || || | || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 168901 AGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTA-TGC 168959 || ||| || ||| | | |||| ||||||| || ||| ||||||| || || Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTACAGC 20272 Query 168960 CTCTAGGAAT 168969 || ||| ||| Sbjct 20273 CTTTAGAAAT 20282 >seq2645 Length=47068 Score = 154 bits (170), Expect = 2e-32 Identities = 265/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | || | ||||| | || ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || || | | ||| || ||| | || || || || || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| ||||| | ||||||||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| | ||||| | || || |||||||| Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || || | ||||| |||||||| |||||||||||||| || | | | Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | || ||| || | || | || || |||||| | |||||||| | | | | Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 168850 ACTAGGTATGAGACCTTGGAT 168870 || |||||| | |||||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 149 bits (164), Expect = 7e-31 Identities = 264/381 (69%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | || | ||||| | || ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || || | | ||| || ||| | || || || || || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| ||||| | ||||||||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || |||| ||||| || |||| |||| | ||||| | || || |||||||| Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || || | ||||| |||||||| |||||||||||||| || | | | Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | || ||| || | || | || || |||||| | |||||||| | | | | Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 168850 ACTAGGTATGAGACCTTGGAT 168870 || |||||| | |||||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 169197 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTC 169256 |||| || || ||| ||||||||||||| ||||| |||||||||||||| | |||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCG--TTCTTT 24816 Query 169257 ACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTA 169316 || |||| | || | | || || || | | ||||| || || | ||||| ||| Sbjct 24815 AC-ACTTCTTGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 169317 CAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 | |||||||||||| | || || || || || |||||||| || || ||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564360969517440