Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq9 194 2e-44 seq3095 125 8e-24 seq2645 116 4e-21 seq748 116 4e-21 seq1688 113 5e-20 seq2612 95.1 1e-14 seq930 84.2 3e-11 >seq9 Length=772998 Score = 194 bits (214), Expect = 2e-44 Identities = 285/404 (71%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 171976 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCA 172035 |||||||| | ||||| ||||| || ||||||||||| || ||||| || | Sbjct 515980 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCA-------ACTCG 515928 Query 172036 ATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAAT 172095 || | || || ||||| || |||||| ||| | | ||||||||||| |||||| Sbjct 515927 ATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAAT 515873 Query 172096 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGA 172155 |||||||||||| || | | | | |||||| | | ||| | | || ||||| Sbjct 515872 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 515813 Query 172156 AGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCA 172215 | |||||||||| | | | | |||||| || ||||| ||| ||| ||||| Sbjct 515812 CGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCA 515753 Query 172216 GCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTC 172275 || ||||| ||||| || |||||| ||| | | || || | ||||| || ||| Sbjct 515752 GCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 515693 Query 172276 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCA 172335 |||||||||||||| |||| |||| ||||| |||||||||||| | || ||| | | | Sbjct 515692 TCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTA 515633 Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 172379 ||||| ||||| || |||||||| || |||||| ||| ||||| Sbjct 515632 GAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 125 bits (138), Expect = 8e-24 Identities = 289/435 (66%), Gaps = 13/435 (3%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| || | ||| | |||| | || ||||||||||| | Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCT 19917 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | ||||| ||||| Sbjct 19918 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 19977 Query 172000 ATCAT-----CTCTGGTGCAGTTGTTCCATCATCAAAC----GCAATAGGTCTCCACTTC 172050 || || ||||||||| || |||| | | | || || || | ||||| Sbjct 19978 ATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTT 20037 Query 172051 TACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAG 172110 |||||| ||||||| ||| | || ||||| ||||| |||||||| ||||||||| || Sbjct 20038 TACCCT----GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAG 20093 Query 172111 TTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTA 172170 | | | | |||||| | | ||| | | || ||||| | |||||||||| Sbjct 20094 CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 20153 Query 172171 TCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCA 172230 | | | | |||||| | || ||||| ||| ||||||||||| ||||| |||| Sbjct 20154 AGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCT 20213 Query 172231 GCATTTGCTGTGTTC 172245 || |||||| ||| Sbjct 20214 GCTACTGCTGTTTTC 20228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || |||||||| || || |||||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGG----TGGTTGGTTCTTAGGAACTAC 173066 || || || | ||||||||||| | || | || ||||||||| ||| ||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 173067 CTTCGTTACATCATGGTATACACATGGTATTG 173098 || || || || |||||||| ||||| |||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGG-ATTG 21196 >seq2645 Length=47068 Score = 116 bits (128), Expect = 4e-21 Identities = 140/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||| ||||| || ||||| || || || | || || ||| | |||||| Sbjct 45691 GCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 45633 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | | ||||| ||||| || ||||||||||| || |||| | || | || || Sbjct 45632 CTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGA 45573 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || || ||||| || |||||||| ||| | | ||||||||||| |||||||||||| Sbjct 45572 TTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGT 45513 Query 172102 CCTTATCAG 172110 |||||| || Sbjct 45512 CCTTATGAG 45504 Score = 113 bits (124), Expect = 5e-20 Identities = 139/189 (74%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||| ||||| || ||||| || || || | || || ||| | |||||| Sbjct 1134 GCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 1192 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | | ||||| ||||| || |||||||||| || |||| | || | || || Sbjct 1193 CTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGA 1252 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || || ||||| || |||||||| ||| | | ||||||||||| |||||||||||| Sbjct 1253 TTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGT 1312 Query 172102 CCTTATCAG 172110 |||||| || Sbjct 1313 CCTTATGAG 1321 >seq748 Length=127770 Score = 116 bits (128), Expect = 4e-21 Identities = 143/194 (74%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || ||| |||||||| | |||| ||||| ||||| |||||||||||| | || ||||| Sbjct 126709 TTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAG 126650 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 ||| |||| ||||| || | |||||| || ||||| ||| ||||| || | || || Sbjct 126649 GCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGC 126590 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 || || ||||| || ||||| |||| || || || ||| | | |||| ||||| Sbjct 126589 GGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACC 126531 Query 172453 ACTGAAGCAGAATC 172466 |||||| | ||||| Sbjct 126530 ACTGAAACTGAATC 126517 >seq1688 Length=72660 Score = 113 bits (124), Expect = 5e-20 Identities = 126/168 (75%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 172528 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCAC 172587 ||||| |||||||| | |||||||| |||||| |||||||||||| | | | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 ||||| || | || ||||| || | | ||||| || || | ||||| |||| Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 |||||||||||||| || |||||||| ||||||||||| || || ||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 >seq2612 Length=46990 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| || || ||| ||| || | ||| |||||||| || ||||| ||| | || Sbjct 6610 ACAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCAGATGTTTGCCATCTTAACCTGCA 6551 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || ||||||||||| || || ||||||||| | || ||||||||||| Sbjct 6550 CAAGACATTTTGCATTCCACATGGCGGAGGTGGTCCTGGCATGGGCCCTATTGGTGT 6494 >seq930 Length=114855 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| || || ||| ||| || | ||| || ||||| || ||||| ||| | || Sbjct 105599 CAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCTGATGTTTGCCATCTTAACCTTCAC 105540 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || || ||||| || || || ||||||||| | |||||||||||||| Sbjct 105539 AAGACATTTTGCATCCCACACGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGT 105484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587967196886080