Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3095 248 1e-60 seq9 230 3e-55 seq2645 219 5e-52 seq748 143 3e-29 seq311 84.2 2e-11 >seq3095 Length=35243 Score = 248 bits (274), Expect = 1e-60 Identities = 342/475 (72%), Gaps = 15/475 (3%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | |||||||| || |||| |||||||| ||| | Sbjct 19797 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | ||||| ||||| || || ||||| ||| ||| ||| | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| | | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 167266 ACATCAT-----CTCTGGTGCAGTTGTTCCTTC----TTCTAATGCTATTGGTCTTCACT 167316 | || || ||||||||| || ||||| | |||| || || || | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 167317 TCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCC 167376 | || || |||||||| ||| | | || |||||||| |||||||| ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 167377 AACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAAC 167436 | || | ||| | |||||| | |||| | | |||||||||||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 167437 TCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTG 167496 | || |||||| ||||||||||| ||||| ||||||||| || ||||| || || | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 167497 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGC 167551 | || ||||||| ||| | | | ||| | |||||||| ||| ||||| || Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 || |||||| | | |||| |||||||||||| | || ||||| || || | || ||| Sbjct 21334 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21275 Query 168555 CCCACTGCTTATCTTGCTATTGG----CGGTTGGCTTACTGGGACTGCTTTCGTCACGAG 168610 || ||||||| | ||| | || |||||| |||| |||||| |||| || || Sbjct 21274 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTACTTTTGTAACTTC 21215 Query 168611 TTGGTATACTCACGGGTTGGCAAGTTCCTA 168640 ||||||||| || || ||||| |||||||| Sbjct 21214 TTGGTATACCCATGGATTGGCTAGTTCCTA 21185 >seq9 Length=772998 Score = 230 bits (254), Expect = 3e-55 Identities = 332/468 (71%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 167181 TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTT 167240 || || ||||||||| ||| ||| ||| | || || |||||||| | || || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 167241 GCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAAT 167300 |||||| | | ||||| ||||| || ||||||||||| || |||| || Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT------ 515930 Query 167301 GCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTAC 167360 | |||| || || || || || |||||| ||| | || || || ||||| ||| Sbjct 515929 -CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATG 167420 ||||||||||||| | || | ||| | |||||| | |||| | | |||||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || | |||| ||||||| ||| ||||| ||||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 167540 || ||||| || | || || ||||||| ||| | | || ||| | |||||||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600 |||||||| | |||||| | || |||| |||||| ||||||| ||| |||| ||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648 | ||||||||||||||| ||||| || || || ||| | || || ||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq2645 Length=47068 Score = 219 bits (242), Expect = 5e-52 Identities = 280/382 (73%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | || ||||| || |||| ||||| || ||| | Sbjct 45794 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 45735 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| ||||| || || ||||||||| ||| || | Sbjct 45734 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 45677 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| || | ||||| |||| Sbjct 45676 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 45617 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || ||||||||||| || ||||| ||||| | || || | || || || || | Sbjct 45616 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 45557 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || || ||||| |||||||||||||||| | || | | Sbjct 45556 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 45497 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | || ||| | |||| | | ||||||||||||||||||||||| || || Sbjct 45496 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 167446 GTCTCGGTATGCGTCCCTGGAT 167467 |||| ||||||||||| ||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGAT 45415 Score = 214 bits (236), Expect = 2e-50 Identities = 279/382 (73%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | || ||||| || |||| ||||| || ||| | Sbjct 1031 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 1090 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| ||||| || || ||||||||| ||| || | Sbjct 1091 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 1148 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| ||||||| || | ||||| |||| Sbjct 1149 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 1208 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || |||||||||| || ||||| ||||| | || || | || || || || | Sbjct 1209 ATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 1268 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || || ||||| |||||||||||||||| | || | | Sbjct 1269 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 1328 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | || ||| | |||| | | ||||||||||||||||||||||| || || Sbjct 1329 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 167446 GTCTCGGTATGCGTCCCTGGAT 167467 |||| ||||||||||| ||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588 |||||||| ||| ||| | | ||| || | || ||||||||||| ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648 |||| ||||| ||| ||||||||||||| | ||| || || || || | || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 167649 GGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTG 167708 || |||||||||||||| || |||||||| ||||| |||| |||| |||||| || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 167709 GTTCGTGAAACCACCGAAACTGAGTC 167734 | | || ||||| |||||||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 >seq311 Length=199615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 168726 GAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCG 168785 || ||| |||||||||| | || |||||| | || || | | | ||||||| || Sbjct 141674 GAAGCATAAGGGGATTTTACTCGTTGATGTCAATTAGGTGGTTTGTAGACTTTTGTCGCT 141615 Query 168786 CTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG 168841 |||||||||||||| || ||||| ||||| ||| | ||||| |||||||| || || Sbjct 141614 CTCCACGGGGCTTTTGCACTAATTGGTTTTATGTTACGTCAATTTGAACTTGCTCG 141559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560527917147200