Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq9 201 2e-46 seq3095 159 5e-34 seq2645 150 3e-31 seq748 136 6e-27 seq1688 96.9 5e-15 >seq9 Length=772998 Score = 201 bits (222), Expect = 2e-46 Identities = 322/462 (70%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||| | ||||| || || || ||||| || ||||||| Sbjct 516032 GCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATTTTTGGTTCT 515975 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || ||||||||||| || | || ||| | || Sbjct 515974 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTC-----GA 515927 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || || || ||||| || |||||| ||| | |||| |||||| | ||||||||||| Sbjct 515926 TTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 515867 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAG 215635 |||| | || || | | |||||| | ||||| | || || || | || Sbjct 515866 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 515807 Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 ||||||||| || | | | |||||| |||||||| |||||| | || || ||| Sbjct 515806 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCT 515747 Query 215696 GTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGAT 215755 || || ||||| ||| || ||| | | || || | ||||| || |||||||||| Sbjct 515746 GTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGAT 515687 Query 215756 GCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCAC 215815 | |||||| | ||||||| ||| || ||||||| ||| |||| ||| ||| |||||| Sbjct 515686 GGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 515627 Query 215816 AACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 ||||| || ||||| ||||| |||||||||||||| ||| || Sbjct 515626 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq3095 Length=35243 Score = 159 bits (176), Expect = 5e-34 Identities = 308/454 (68%), Gaps = 13/454 (3%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 19819 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 19878 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 19879 GCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 19938 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACA-----ACATCATCTCTGGTGCTG 215489 | ||||| ||| ||||||||||| | ||||| |||| | || ||||||||||| Sbjct 19939 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCA 19998 Query 215490 TT----GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCA 215545 || |||||| ||| || |||||||| ||||| |||| ||||||||| ||| Sbjct 19999 TTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCA 20054 Query 215546 ACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTC 215605 | ||||| || ||| | |||||||| || |||| | || || | | |||||| | Sbjct 20055 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 20114 Query 215606 ATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGA 215665 ||||| | || || || | ||||||||||| || | | | |||||| | Sbjct 20115 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGT 20174 Query 215666 CCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTG 215725 |||||||| |||||| || || || ||||| | ||||| ||| || ||| | | Sbjct 20175 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 20234 Query 215726 TATCCATTCGGTCAGGGTTCTTTCTCTGATGCTA 215759 | || | ||||| || ||| |||||||||| Sbjct 20235 GACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 150 bits (166), Expect = 3e-31 Identities = 253/362 (70%), Gaps = 7/362 (2%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| | || |||||||| || | ||||| ||| ||| | | Sbjct 45772 ACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTA-CCTTATTGA- 45715 Query 215375 GCTACCACTTGT---TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 | || |||| | || || | || |||||||| || ||||| || ||||| || || Sbjct 45714 -CCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGT 45657 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | ||||| ||| |||||||| || | ||||| ||||| || ||||||||||| || Sbjct 45656 ATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATT 45597 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| | |||||||| || || ||||| || |||||||| ||| || || Sbjct 45596 ATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTT 45537 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||| | ||||||||||| |||| | || || | | || ||| | ||||| Sbjct 45536 GATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGT 45477 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 45476 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 45417 Query 215672 AT 215673 || Sbjct 45416 AT 45415 Score = 145 bits (160), Expect = 1e-29 Identities = 252/362 (70%), Gaps = 7/362 (2%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| | || |||||||| || | ||||| ||| ||| | | Sbjct 1053 ACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTA-CCTTATTGA- 1110 Query 215375 GCTACCACTTGT---TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 | || |||| | || || | || |||||||| || ||||| || ||||| || || Sbjct 1111 -CCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGT 1168 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | ||||| ||| |||||||| || | ||||| ||||| || |||||||||| || Sbjct 1169 ATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATT 1228 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| | |||||||| || || ||||| || |||||||| ||| || || Sbjct 1229 ATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTT 1288 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||| | ||||||||||| |||| | || || | | || ||| | ||||| Sbjct 1289 GATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGT 1348 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 1349 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 1408 Query 215672 AT 215673 || Sbjct 1409 AT 1410 >seq748 Length=127770 Score = 136 bits (150), Expect = 6e-27 Identities = 149/197 (76%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| ||| ||| |||| | | ||||||||||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| |||||||||| || | ||| ||||| ||||| |||||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| |||| | || || ||| | | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 215915 ATCAGAGAGACAACTGA 215931 |||| ||||| ||||| Sbjct 126542 CTCAGGGAGACCACTGA 126526 >seq1688 Length=72660 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 216002 GGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCAC 216061 ||||| |||||||| | ||||||||||| || |||||||||||| | |||| || Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCG--TTCTTTAC 24814 Query 216062 TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACT 216121 |||| | || || | ||||| || | |||||| ||||| | ||| | ||| Sbjct 24813 -ACTTCTTGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 216122 ATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 ||||| |||||||| || |||||||| |||||||| ||||| || || Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744975165093440