Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq9 214 2e-50 seq3095 194 2e-44 seq2645 187 3e-42 seq1688 140 4e-28 seq748 131 2e-25 >seq9 Length=772998 Score = 214 bits (236), Expect = 2e-50 Identities = 311/437 (71%), Gaps = 18/437 (4%) Strand=Plus/Minus Query 181920 GATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATC 181979 ||||| || ||||| | || || | |||||| | | ||||| ||||| || ||| Sbjct 516010 GATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 515951 Query 181980 TCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAA 182039 |||||||| || | |||||| | |||| || || |||||||| |||| Sbjct 515950 TCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGGAA 515903 Query 182040 GCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCAC 182099 ||||| || |||||||| ||| | || || |||||||||| | || ||||| | ||| Sbjct 515902 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 515843 Query 182100 TTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTA 182156 ||| | | || | || || | | ||||| ||||||||||||||| || | | | Sbjct 515842 TTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTG 515786 Query 182157 GGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 182216 ||||||| ||| ||||| ||| ||| | || ||||| || | || || ||||||| Sbjct 515785 GGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTT 515726 Query 182217 TTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCA 182276 ||||| | || ||| | |||||||| ||||| |||| ||||| | ||||||| Sbjct 515725 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTT 515666 Query 182277 GGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTC 182336 || || ||||||| |||| | || ||| | | ||||||||||| ||||||||||| || Sbjct 515665 GGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTT 515606 Query 182337 CACATGTTGGGTGTAGC 182353 |||||||| |||||||| Sbjct 515605 CACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 194 bits (214), Expect = 2e-44 Identities = 324/462 (70%), Gaps = 21/462 (5%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | || ||||| || |||| ||||| ||||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | ||||| ||||| || || | |||||| | || || || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 181973 CATCAT-----CTCTGGTGCTGTTGTCCCATCCTCCAAC----GCAATTGGTCTTCACTT 182023 || || ||||||||| || | || ||| | | || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 182024 CTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 182083 ||||| ||||||||||| || ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 182084 ACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGA 182140 || ||||| | |||||| | | || | || || | | ||||| ||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGA 20149 Query 182141 ACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGC 182200 |||| || ||| | ||||||||||| ||||| ||| ||||| || ||||| || || Sbjct 20150 ACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGC 20209 Query 182201 TGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGG 182242 || || ||||||| ||||| | | ||| | |||||||| Sbjct 20210 AGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 20251 >seq2645 Length=47068 Score = 187 bits (206), Expect = 3e-42 Identities = 282/394 (72%), Gaps = 9/394 (2%) Strand=Plus/Minus Query 181784 GTGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTT 181843 ||||| || |||||| | ||| | || ||| | |||||||| || |||| ||||| Sbjct 45803 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 45744 Query 181844 TGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCG 181902 ||| || |||||||||| || | ||| | |||| ||||| || || | || ||| Sbjct 45743 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 45685 Query 181903 TAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGT 181962 | ||||| ||||| || ||||| || ||||| || || || || ||||||| || | | Sbjct 45684 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 45626 Query 181963 ATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACT 182022 |||| ||||| || ||||||||||| || | || | || | || || | || | Sbjct 45625 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 45566 Query 182023 TCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCC 182082 | |||||||| ||||||||||| ||| ||||||| ||| | || || |||||||||| Sbjct 45565 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 45506 Query 182083 AACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGG 182139 | || ||||| | || ||| | | || | || || || ||||| |||||||||| Sbjct 45505 AGCTAATTGTTCTACAGTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGG 45449 Query 182140 AACTTTCTTACCGCTTAGGTATGCGTCCCTGGAT 182173 ||||| || ||| | ||||||||||| ||||| Sbjct 45448 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 183 bits (202), Expect = 4e-41 Identities = 281/394 (71%), Gaps = 9/394 (2%) Strand=Plus/Plus Query 181784 GTGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTT 181843 ||||| || |||||| | ||| | || ||| | |||||||| || |||| ||||| Sbjct 1022 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTT 1081 Query 181844 TGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCG 181902 ||| || |||||||||| || | ||| | |||| ||||| || || | || ||| Sbjct 1082 TGGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCA 1140 Query 181903 TAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGT 181962 | ||||| ||||| || ||||| || ||||| || || || || ||||||| || | | Sbjct 1141 TCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTT 1199 Query 181963 ATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACT 182022 |||| ||||| || |||||||||| || | || | || | || || | || | Sbjct 1200 ATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATT 1259 Query 182023 TCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCC 182082 | |||||||| ||||||||||| ||| ||||||| ||| | || || |||||||||| Sbjct 1260 TTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATG 1319 Query 182083 AACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGG 182139 | || ||||| | || ||| | | || | || || || ||||| |||||||||| Sbjct 1320 AGCTAATTGTTCTACAGTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGG 1376 Query 182140 AACTTTCTTACCGCTTAGGTATGCGTCCCTGGAT 182173 ||||| || ||| | ||||||||||| ||||| Sbjct 1377 AACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 140 bits (154), Expect = 4e-28 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 182500 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGC 182559 |||| || || ||||| || ||||||||||| || ||||||||||| ||||| || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 182560 ACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCA 182619 ||||||| ||||| |||||||| | || ||||||||||| || | ||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 182620 CGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 182679 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 182680 GTGTCCTTAACACTTGGGCAGAT 182702 | | | || |||||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 131 bits (144), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 182235 GGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATG 182294 |||||||| || || ||| ||| | | |||||||| || || ||||||| |||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 182295 TTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA 182354 | || ||||| || |||||||||| |||| |||||| || ||||| || |||||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 182355 GGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTC 182414 ||||||||||| ||||| || || ||||| ||||| |||| ||||| || ||| | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 182415 GTCCGTGAGACGACTGA 182431 || | ||||| ||||| Sbjct 126542 CTCAGGGAGACCACTGA 126526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611608619226400