Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq9 219 5e-52 seq3095 176 5e-39 seq2645 145 9e-30 seq1688 111 2e-19 >seq9 Length=772998 Score = 219 bits (242), Expect = 5e-52 Identities = 332/472 (70%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| | || |||||||||||| | | | || || ||||| || || ||| | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 ||||| || | ||||| ||||| || ||||||||||| || ||||| || Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACT------ 515930 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || | | || || || || ||| |||||| ||| |||| ||||| ||||| || Sbjct 515929 -----CGAT-TGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 || |||||||||||| | || || | | |||||| | | || | || || ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | | || | ||||||| ||||||||| ||| ||| || Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || ||||| || ||||| ||||| | || ||| | ||||| ||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 ||||| || || |||||| |||| |||| ||||| || ||||| ||| | |||||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTA 170254 | |||||||||||| |||||||| ||||| || ||| ||| || ||| ||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGTA 515584 >seq3095 Length=35243 Score = 176 bits (194), Expect = 5e-39 Identities = 316/461 (69%), Gaps = 13/461 (3%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 19807 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 19866 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | ||||||||||| || || || || || Sbjct 19867 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 19926 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT---- 169874 || ||||| || | || ||||| | ||||| || | ||||| ||||| || || Sbjct 19927 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTA 19986 Query 169875 -CTCTGGTGCAGTTGTTCCATC----TTCAAACGCAATCGGTCTCCACTTCTATCCTATT 169929 ||||||||| || |||| | ||| || ||||| | ||||| || ||| Sbjct 19987 TCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCCT--- 20043 Query 169930 TGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATC 169989 ||||||| ||| || | ||||||||||| || || || ||||||||| | || || | Sbjct 20044 -GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 20102 Query 169990 TTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGT 170049 | |||||| | | || | || || |||||| | |||||||||| | |||| Sbjct 20103 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 20162 Query 170050 TTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCT 170109 | ||||||||||||||||| ||| |||||||| ||||| || |||| || ||| Sbjct 20163 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 20222 Query 170110 GTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGA 170150 || ||||| | | ||| | ||||| ||| ||| || || Sbjct 20223 GTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGA 20263 >seq2645 Length=47068 Score = 145 bits (160), Expect = 9e-30 Identities = 260/374 (70%), Gaps = 7/374 (2%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || | || ||||| || || ||||||||||| Sbjct 45784 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 45725 Query 169759 TGTCTATTAGCAGCAGCAAC--CTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815 |||| | || |||| ||| ||||| | || ||||||||||| || || || Sbjct 45724 ACCTTATTGAC--CA-CAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTA 45669 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| || | || ||||| | ||||| | | ||||| ||||| || ||| Sbjct 45668 GATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATC 45609 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||||||| || |||| |||| | ||||| | || || || || ||||||||| Sbjct 45608 TCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAA 45549 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || ||| | | ||||| ||||| || || |||||||||||| | || || | | || Sbjct 45548 GCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAG 45489 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || || |||||| | |||||||||| | |||| | ||| Sbjct 45488 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 45429 Query 170056 ATGCGTCCTTGGAT 170069 |||||||||||||| Sbjct 45428 ATGCGTCCTTGGAT 45415 Score = 140 bits (154), Expect = 4e-28 Identities = 259/374 (69%), Gaps = 7/374 (2%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || | || ||||| || || ||||||||||| Sbjct 1041 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 1100 Query 169759 TGTCTATTAGCAGCAGCAAC--CTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTG 169815 |||| | || |||| ||| ||||| | || ||||||||||| || || || Sbjct 1101 ACCTTATTGAC--CA-CAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTA 1156 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| || | || ||||| | ||||| | | ||||| ||||| || || Sbjct 1157 GATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTC 1216 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||||||| || |||| |||| | ||||| | || || || || ||||||||| Sbjct 1217 TCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAA 1276 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || ||| | | ||||| ||||| || || |||||||||||| | || || | | || Sbjct 1277 GCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAG 1336 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || || |||||| | |||||||||| | |||| | ||| Sbjct 1337 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 1396 Query 170056 ATGCGTCCTTGGAT 170069 |||||||||||||| Sbjct 1397 ATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 111 bits (122), Expect = 2e-19 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 170396 ATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTC 170455 |||| || |||||| || | ||||||||||||||||| || ||||| |||| |||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGT--TCTTT 24816 Query 170456 ACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCA 170515 || |||| | ||| | | |||||| || | |||||||| ||| | | |||||| | | Sbjct 24815 AC-ACTTCTTGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 170516 CAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTC 170555 | |||||||| ||||| ||||| || || |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582764740163200