Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq9 251 8e-62 seq3095 192 7e-44 seq2645 179 4e-40 seq1688 122 1e-22 seq748 122 1e-22 >seq9 Length=772998 Score = 251 bits (278), Expect = 8e-62 Identities = 324/445 (73%), Gaps = 14/445 (3%) Strand=Plus/Plus Query 84392 ACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGAC 84451 || ||| || || ||||||||||| ||||||||||||||||| || || ||| ||| || Sbjct 515585 ACAAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 515644 Query 84452 AAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTG 84511 || ||| ||||||| || || |||| || | ||||| |||||||||||| ||||| Sbjct 515645 AATCATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 515704 Query 84512 CCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC 84571 || | ||| || | | ||| ||||||| || |||| ||| ||||| || | ||||| Sbjct 515705 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAAC 515764 Query 84572 ACAGATCCATGGACGCATACCGAGAC-GATATGAAAGTTCCCATTCACGACCCATGTAAG 84630 | ||||| ||| ||||||| |||| || || ||||||||| ||||||||||| ||| Sbjct 515765 AGCAATCCAAGGATGCATACCCAGACAGAAAT-TAAGTTCCCACTCACGACCCATATAAC 515823 Query 84631 CAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCC 84690 | | |||||| | |||||| | |||| || | |||||| |||||||| |||| || Sbjct 515824 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 515883 Query 84691 ATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGG 84750 |||| || | | ||| |||||| ||| || || ||||| |||| | | Sbjct 515884 ATTCATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCG-------AG 515931 Query 84751 ATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCT 84810 ||||| | ||||||||| || || |||||||| || | | ||||||| | |||| Sbjct 515932 TTGGAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCT 515991 Query 84811 CACGGATACCGTCAATATCAACTGG 84835 || | ||||| |||||||| | ||| Sbjct 515992 CATGAATACCATCAATATCTATTGG 516016 >seq3095 Length=35243 Score = 192 bits (212), Expect = 7e-44 Identities = 329/474 (69%), Gaps = 15/474 (3%) Strand=Plus/Minus Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||||||| ||| ||||| || | ||| | | | ||| ||||||| || ||||||| Sbjct 20265 CATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAA 20206 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCC 84612 | ||||| || || |||||| ||||| ||||||||||| ||||| | |||||||| Sbjct 20205 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 20146 Query 84613 ATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG 84672 | ||||||||||| ||| | | |||||| | |||||| | |||| || | ||||| Sbjct 20145 ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 20086 Query 84673 GTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTA 84732 | || ||||| |||| ||| || || | | ||| ||||||| ||| || || || | Sbjct 20085 GACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCC----AGGGTAAAAGTGCA 20030 Query 84733 GACCAATAGCATTAG----AGGATGGAACTACGGCACCAG-----AAATGATGTTGTTTC 84783 || || || || ||| |||| | |||||||| | || || ||||||| Sbjct 20029 ATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGTTTC 19970 Query 84784 CGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCAC 84843 | || | | |||||||| || |||||||| ||||| |||||||| ||||| || ||| Sbjct 19969 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAG 19910 Query 84844 CAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902 | | ||| || || || || ||||| ||| || | | || || || ||||| | | Sbjct 19909 CGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACA 19851 Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 || ||||| || | || | |||||| | ||| || | ||| | |||||| Sbjct 19850 CCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAG 19797 >seq2645 Length=47068 Score = 179 bits (198), Expect = 4e-40 Identities = 272/383 (71%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635 ||||| ||||||||||| ||||| | ||||||||| ||||||||||| ||| | | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695 |||||| | ||| || | |||| || | |||||| |||||||| |||| |||||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGA 84755 || | ||| ||||||||||| || || ||||| | || || | ||| | ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 84756 ACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGG 84815 | | ||||||||| || || |||||||| || | |||||||||| || |||||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 84816 ATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGC 84874 ||||| |||||||| ||||| || || | | ||| || || || || ||||| ||| | Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 45712 Query 84875 AGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 | | || || || ||||| | | |||||||| || | || | ||| || | || Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 84935 GGAGGTGACCCAATCACAGAAGT 84957 | || | ||| | ||||||| Sbjct 45773 GCTAGTTATCCAGTTGCAGAAGT 45795 Score = 176 bits (194), Expect = 5e-39 Identities = 271/383 (71%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635 ||||| ||||||||||| ||||| | ||||||||| ||||||||||| ||| | | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695 |||||| | ||| || | |||| || | |||||| |||||||| |||| |||||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGA 84755 || | ||| ||||||||||| || || ||||| | || || | ||| | ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 84756 ACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGG 84815 | | ||||||||| | || |||||||| || | |||||||||| || |||||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 84816 ATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGC 84874 ||||| |||||||| ||||| || || | | ||| || || || || ||||| ||| | Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 1113 Query 84875 AGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 | | || || || ||||| | | |||||||| || | || | ||| || | || Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 84935 GGAGGTGACCCAATCACAGAAGT 84957 | || | ||| | ||||||| Sbjct 1052 GCTAGTTATCCAGTTGCAGAAGT 1030 >seq1688 Length=72660 Score = 122 bits (134), Expect = 1e-22 Identities = 148/201 (74%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 ||| ||||| ||||| | || || ||||||||| || | | || ||||| || || Sbjct 24674 ATCAGCCCAAGTATTCATAAGGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAA 24733 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 ||||| || || |||||||| || |||| ||| | ||||| ||||| || || | || Sbjct 24734 ACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTATTAC 24793 Query 84167 TGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAA 84226 ||||||||||||||| ||||| | ||||||| |||||||| |||||| ||||| Sbjct 24794 AGGCCAAGCAGCCAAG---AAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAA 24850 Query 84227 GATAAGACGACCGAAGTAGCC 84247 ||| | ||||| || || || Sbjct 24851 GATTAATCGACCAAAATAACC 24871 >seq748 Length=127770 Score = 122 bits (134), Expect = 1e-22 Identities = 149/202 (74%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 || |||| || || || | || | | ||| || || | |||| |||||| ||| || Sbjct 126521 CAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGA 126580 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || || |||||||| |||||| ||||||||| Sbjct 126581 ATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGT 126639 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || | |||||||| |||| ||| ||||||| || || ||||| || | | ||| | Sbjct 126640 TGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATAC 126699 Query 84493 CATCAGAGAAAGAACCTTGCCC 84514 ||| ||| ||| ||||| || Sbjct 126700 CATTAGAAAAACTTCCTTGACC 126721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571191993566240