Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2715 120 2e-21 seq201 120 2e-21 seq22 98.7 8e-15 seq718 96.9 3e-14 seq1422 93.3 3e-13 seq4465 91.5 1e-12 seq1709 91.5 1e-12 seq3577 89.7 4e-12 seq1132 87.8 1e-11 seq2094 86.0 5e-11 >seq2715 Length=43111 Score = 120 bits (132), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || ||||||||||| || || || ||| | ||| | Sbjct 21921 AAATTACAAAAGCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAA 21980 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| |||||| | ||||| |||||||| |||||||| |||| Sbjct 21981 CAAAAGATGCTGGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTG 22040 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| |||| || ||||| ||| | ||| ||||||| Sbjct 22041 CTGCATCACTGGCCTATGGTTTTGAGAAGAAAAATAATGA 22080 Score = 91.5 bits (100), Expect = 1e-12 Identities = 208/313 (66%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 552286 AAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345 || || |||| ||| ||||||||||||| ||||||||||||| || ||| | || || Sbjct 23974 AAGATGTTGTTCTTCTAGATGTTACTCCATTATCTCTTGGTTTGGAGACATTGGGTGGCG 24033 Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405 | ||||| || ||||| ||| ||||| || | || |||||| ||||| | Sbjct 24034 TGATGACAAAGATTATCCCTAGGAATACCACACTGCCCACCTCAAAATCAGAAGTATTCT 24093 Query 552406 CTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAAT 552465 | || ||||| || || |||| ||| | || | | ||||||||| | | Sbjct 24094 CAACTGCAGCAGATGGACAGACAAGTGTTGAGATTAATGTTCTCCAGGGAGAAAGAGAGT 24153 Query 552466 TCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTC 552525 | | || || || |||||| | ||| || || || || || ||||| || | Sbjct 24154 TTGTCAGGGACAACAAGTCACTTGGAAGTTTCCGGTTGGATGGGATCCCACCTGCACCAC 24213 Query 552526 GTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGA 552585 |||| || || ||||| ||||| | || || || || |||||||| ||| | ||| Sbjct 24214 GTGGTGTCCCACAAATCGAAGTGAAGTTTGACATTGACGCCAATGGCATTCTCTCTGTTG 24273 Query 552586 CTGCTTGTGATAA 552598 ||||| ||| || Sbjct 24274 CTGCTGTTGACAA 24286 >seq201 Length=241772 Score = 120 bits (132), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || ||||||||||| ||||| |||||| | ||| | Sbjct 140135 AAATTACAAAAGCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAA 140076 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| ||||| | |||||||||||||| || ||||| |||| Sbjct 140075 CAAAAGATGCTGGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTG 140016 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| || | || ||||| ||| | ||| ||||||| Sbjct 140015 CTGCATCATTGGCTTATGGCTTTGAGAAGAAAAATAATGA 139976 Score = 86.0 bits (94), Expect = 5e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 361692 TTTTACTTC-CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATA 361750 |||| |||| ||| |||||||| ||||| ||||| ||||||||||| || || || | Sbjct 139982 TTTTTCTTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGA 140041 Query 361751 ACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAA 361810 || | ||||| || || |||||| || ||| | ||||| |||||| ||| Sbjct 140042 ACCTCCAGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAA 140101 Query 361811 TATGCAGGAACAGTAATCACTGCTTTT 361837 ||||| ||||| |||| ||||||||| Sbjct 140102 TATGCTGGAACTGTAACAACTGCTTTT 140128 >seq22 Length=583761 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || |||||||| || | || || || || |||| Sbjct 190633 ATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 190574 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 190573 CTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATCAATGAGCCAACTGCTGCTGCTA 190514 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 190513 TTGCTTATGGTCTCGACAA 190495 >seq718 Length=134957 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || |||||||| |||||||| || | ||| || ||||||||| Sbjct 59171 GCTGTGATCACTGTCCCTGCATATTTCAATGACTCGCAGAGGACAGCAACAAAAGATGCT 59230 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| | | ||||| |||||||| ||||| |||||||| || || | Sbjct 59231 GGCCGCATTGCTGGGTTGGAGGTTCTGCGTATTATAAATGAGCCTACTGCCGCATCATTG 59290 Query 550520 GCATATGG 550527 ||||| || Sbjct 59291 GCATACGG 59298 >seq1422 Length=85827 Score = 93.3 bits (102), Expect = 3e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| |||| |||||||| || || ||||| Sbjct 61331 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAAGCCACAAAGGATGCA 61272 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || ||||| | || ||||||||||| || || ||||| || Sbjct 61271 GGTCGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTG 61212 Query 550520 GCATATGGA 550528 | |||||| Sbjct 61211 TCTTATGGA 61203 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||||| | | ||| ||||||||||| || || ||| | ||||| ||| || || Sbjct 61204 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 61263 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || |||||| ||||||||||| ||||||||||| ||||| || ||||||||| Sbjct 61264 ATCCGACCTGCATCCTTTGTGGCTTGACGCTGTGCATCATTGAAATAAGCTGGAACAGTA 61323 Query 361826 ATCACTGCTTTT 361837 ||||| || ||| Sbjct 61324 ATCACAGCCTTT 61335 >seq4465 Length=15934 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| || | || || || || ||||| || ||| Sbjct 6629 ACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCGGGTGTGATT 6688 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || ||||| || ||||| |||||||| || ||||||||||| |||| ||||| Sbjct 6689 GCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTATTGCCTATGGT 6748 Query 550529 CTTGATAA 550536 ||||| || Sbjct 6749 CTTGACAA 6756 >seq1709 Length=73423 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||||| | ||||| | || | || || ||||||| Sbjct 11816 CAGCATCCATGCCATCTTCTCCATATAGGAACTGAATGACATCTCCCAATGA-ATTTCTT 11758 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 || ||||||||||| | || | ||||| || | ||| || | | | | |||||| Sbjct 11757 ACAGTACCATCATATTTGACCATGATGTCCTCCATAGCTTTCACAAGTCTCCGCTGGATA 11698 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | ||| || | ||||||| ||| | |||||| || || ||||| | Sbjct 11697 TAGCCAGTCTCAGAAGTCTTCACGGCAGTATCAATCAGACCTTCCCTACCACCCATAGCA 11638 Query 390982 TGGAAGAAAAATTC 390995 |||||||||||||| Sbjct 11637 TGGAAGAAAAATTC 11624 >seq3577 Length=27265 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| ||||| | || ||||| ||||| || |||||| Sbjct 11467 GCTGTTATTACTGTCCCTGCTTATTTCAATGATGCTCAGCGTCAGGCTACAAAGGATGCT 11526 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| ||| | || | | ||||||||||| || |||||||| || || Sbjct 11527 GGTAGAATTGCTGGGCTTGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTG 11586 Query 550520 GCATATGGA 550528 | |||||| Sbjct 11587 TCCTATGGA 11595 >seq1132 Length=101899 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 ||||||||| ||||||||||| | || | ||||| || | ||| || | | | | Sbjct 87050 ATTTCTTACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 87109 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 |||||||| ||||| || | ||| || | || |||| ||| | ||||||||| || | Sbjct 87110 TTGGATATGGCCAGTCTCAGAAGTCTTCACAGCTGTATCAATCAGACCTTCTCTACCACC 87169 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | |||||||||||||| Sbjct 87170 CATAGCATGGAAGAAAAATTC 87190 >seq2094 Length=60286 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || || || || ||||| || | || || || || || ||||| | Sbjct 35057 TAACAGTGCCTGCCTACTTCAACGACTCGCAGAGGCAGGCCACCAAGGACGCTGGTGTCA 34998 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || ||||| | ||||| ||||||||||| ||||||||||| |||| |||| Sbjct 34997 TTGCCGGCCTCAATGTGATGCGTATAATCAATGAACCCACTGCTGCTGCCATTGCCTATG 34938 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 34937 GTCTTGACAA 34928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028691635819720