Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq9 199 1e-46 seq3095 192 2e-44 seq2645 168 2e-37 seq748 105 2e-18 seq1688 104 7e-18 >seq9 Length=772998 Score = 199 bits (220), Expect = 1e-46 Identities = 325/468 (69%), Gaps = 14/468 (3%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||||||||| | | ||||||| ||||| || | |||||| || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 | || || ||| | || ||||||||||| || || || || | | || ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 515931 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 | || | ||||||||||| || |||||||| | || || || ||| ||||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 ||||| || || ||| | || ||| | | ||||||||| | || ||||| ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || | |||||||||| || | | || || ||| || ||||| ||||||| || Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | || || ||| || || ||||| |||| ||| | || ||||| ||| Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 || |||||| |||||| | || |||| ||||||||| ||||||||| | |||||| | Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | ||| || || || || ||||| ||||| || ||| ||||| ||| Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 192 bits (212), Expect = 2e-44 Identities = 323/464 (70%), Gaps = 15/464 (3%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 19807 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 19866 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | || |||||||| || || || ||||| Sbjct 19867 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 19925 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATA-- 25987 ||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| ||| Sbjct 19926 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 19985 Query 25988 ---TCAGGAGC----AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 || || || | || | || | ||| || |||||| | || ||||||| Sbjct 19986 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 20041 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 ||||||||||| | | || |||||| ||||||||||||| || ||| | || ||| | Sbjct 20042 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 20101 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 20102 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 20161 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 20162 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 20221 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATG 26264 || ||||| || | ||| | || ||||| |||||| ||||| Sbjct 20222 TGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATG 20265 >seq2645 Length=47068 Score = 168 bits (186), Expect = 2e-37 Identities = 263/372 (71%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || ||||| ||||| || | |||||||| ||||| | ||||| || Sbjct 45784 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 45725 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | | ||| | ||| ||||| | |||||||||||||| || || ||||| Sbjct 45724 ACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGA 45667 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || || | || ||||||||||| || || Sbjct 45666 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 45607 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| | |||||| | ||||||||||| || |||||||| Sbjct 45606 TGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGC 45547 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || || | || || ||| |||||||||| || || ||| | || ||| | | || || Sbjct 45546 TGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTT 45487 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 45486 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 45427 Query 26170 GAGACCATGGAT 26181 | | || ||||| Sbjct 45426 GCGTCCTTGGAT 45415 Score = 165 bits (182), Expect = 2e-36 Identities = 262/372 (70%), Gaps = 3/372 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || ||||| ||||| || | |||||||| ||||| | ||||| || Sbjct 1041 TGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCT 1100 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | | ||| | ||| ||||| | |||||||||||||| || || ||||| Sbjct 1101 ACCTTATTGACCACAACTTC-TGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGA 1158 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || || | || ||||||||||| | || Sbjct 1159 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTC 1218 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| | |||||| | ||||||||||| || |||||||| Sbjct 1219 TGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGC 1278 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || || | || || ||| |||||||||| || || ||| | || ||| | | || || Sbjct 1279 TGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTT 1338 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 1339 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1398 Query 26170 GAGACCATGGAT 26181 | | || ||||| Sbjct 1399 GCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 105 bits (116), Expect = 2e-18 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || ||||| |||||| | |||| ||| || | || |||||||||||||| ||||||||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | |||||||| ||| | || || || || | ||| ||||| || || ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 26363 GGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 || || ||||| || | || ||| ||||||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 126568 >seq1688 Length=72660 Score = 104 bits (114), Expect = 7e-18 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 26510 GGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCAT 26569 || || ||||| ||||||| || || ||||| ||||| || ||| |||||| | || Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 26570 TTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACA 26629 ||||| ||| ||||||| || | || || ||| | || || | ||||| | || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 24707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146706488127072