Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq9 248 3e-61 seq3095 221 4e-53 seq2645 159 1e-34 >seq9 Length=772998 Score = 248 bits (274), Expect = 3e-61 Identities = 315/434 (73%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 36396 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 36455 || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || |||| | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 36456 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 36515 ||||| |||||||| || | || || | ||||||||||||||||||||| ||||| ||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 36516 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 36575 | |||||| | ||||| |||||| || |||| |||||| ||||||| || ||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || |||||| || | || |||||||||| | || |||| ||| | Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 | ||||| | ||||| | ||||| || | ||| || || || || |||||||| || Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755 || || | |||||||||| |||||||| || || | | ||| | ||| Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCA-ATCGA-----------GTTGGA 515936 Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815 | || || |||||||| || ||||||||||| ||||| | || | | ||||||| || Sbjct 515937 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATGA 515996 Query 36816 ATACCATCTATATC 36829 |||||||| ||||| Sbjct 515997 ATACCATCAATATC 516010 >seq3095 Length=35243 Score = 221 bits (244), Expect = 4e-53 Identities = 330/468 (71%), Gaps = 13/468 (3%) Strand=Plus/Minus Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 36549 || ||||||| ||||| ||||| |||| ||||| | ||||| |||||| || |||| Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 36550 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTT 36609 ||||||| |||||||| || ||| ||||| || | |||||| || | ||||||||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 36610 CCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGAT 36669 |||| | || |||| ||| | | ||||| | ||||| | ||||| || | || Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 36670 ATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGT 36729 | || || || || ||||||||||| || | | |||||||||||| ||||| |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGT 20033 Query 36730 GAAGACCGATTGCGTTCGATGATGGGACG----ATTGCCCCAGAG-----ATGATGTTGT 36780 | | ||||| || || | || | | || || |||||| || || |||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 36781 TTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCG 36840 ||||||| ||||| | || || |||||||||||||||||||| ||||| || ||||| | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 36841 CAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTA 36900 |||| | || || || | |||| | | ||| || || | | ||||||||| | | Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAA 19853 Query 36901 CCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 | || ||||| || | || || ||||| | || || || | ||||| Sbjct 19852 CACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 19805 >seq2645 Length=47068 Score = 159 bits (176), Expect = 1e-34 Identities = 260/373 (70%), Gaps = 1/373 (0%) Strand=Plus/Plus Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || | |||||| || | ||||||||||||| | || |||| ||| | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 | ||||| | || || | ||||| || | ||| || || || || |||||||| || Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755 || | | |||||||||||| |||||||| || || | ||||| | || | || Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815 | || || |||||||| || ||||||||||| |||| | || || |||||||||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 36816 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 36875 |||||||| ||||| || ||||| || || | || || || | |||| | | || Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 45713 Query 36876 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 36935 || || | | ||||||||| | ||||||||||| || | || || || || | || Sbjct 45714 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 45773 Query 36936 CTTGTAACCCAGT 36948 || || | ||||| Sbjct 45774 CTAGTTATCCAGT 45786 Score = 156 bits (172), Expect = 1e-33 Identities = 259/373 (69%), Gaps = 1/373 (0%) Strand=Plus/Minus Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635 ||||| || | |||||| || | ||||||||||||| | || |||| ||| | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695 | ||||| | || || | ||||| || | ||| || || || || |||||||| || Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755 || | | |||||||||||| |||||||| || || | ||||| | || | || Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815 | || || ||||||| || ||||||||||| |||| | || || |||||||||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 36816 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 36875 |||||||| ||||| || ||||| || || | || || || | |||| | | || Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 1112 Query 36876 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 36935 || || | | ||||||||| | ||||||||||| || | || || || || | || Sbjct 1111 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 1052 Query 36936 CTTGTAACCCAGT 36948 || || | ||||| Sbjct 1051 CTAGTTATCCAGT 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150433982209512