Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15]
11,428 sequences; 397,009,957 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq9 248 3e-61
seq3095 221 4e-53
seq2645 159 1e-34
>seq9
Length=772998
Score = 248 bits (274), Expect = 3e-61
Identities = 315/434 (73%), Gaps = 12/434 (3%)
Strand=Plus/Plus
Query 36396 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 36455
|| ||||| | ||| || || |||||||||||||| ||||| ||| ||| || |||| |
Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648
Query 36456 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 36515
||||| |||||||| || | || || | ||||||||||||||||||||| ||||| |||
Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708
Query 36516 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 36575
| |||||| | ||||| |||||| || |||| |||||| ||||||| || |||
Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768
Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635
||||| || |||||| || | || |||||||||| | || |||| ||| |
Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828
Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695
| ||||| | ||||| | ||||| || | ||| || || || || |||||||| ||
Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888
Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755
|| || | |||||||||| |||||||| || || | | ||| | |||
Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCA-ATCGA-----------GTTGGA 515936
Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815
| || || |||||||| || ||||||||||| ||||| | || | | ||||||| ||
Sbjct 515937 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATGA 515996
Query 36816 ATACCATCTATATC 36829
|||||||| |||||
Sbjct 515997 ATACCATCAATATC 516010
>seq3095
Length=35243
Score = 221 bits (244), Expect = 4e-53
Identities = 330/468 (71%), Gaps = 13/468 (3%)
Strand=Plus/Minus
Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 36549
|| ||||||| ||||| ||||| |||| ||||| | ||||| |||||| || ||||
Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209
Query 36550 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTT 36609
||||||| |||||||| || ||| ||||| || | |||||| || | |||||||||
Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149
Query 36610 CCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGAT 36669
|||| | || |||| ||| | | ||||| | ||||| | ||||| || | ||
Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089
Query 36670 ATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGT 36729
| || || || || ||||||||||| || | | |||||||||||| ||||| ||||
Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGT 20033
Query 36730 GAAGACCGATTGCGTTCGATGATGGGACG----ATTGCCCCAGAG-----ATGATGTTGT 36780
| | ||||| || || | || | | || || |||||| || || ||||
Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973
Query 36781 TTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCG 36840
||||||| ||||| | || || |||||||||||||||||||| ||||| || ||||| |
Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913
Query 36841 CAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTA 36900
|||| | || || || | |||| | | ||| || || | | ||||||||| | |
Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAA 19853
Query 36901 CCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948
| || ||||| || | || || ||||| | || || || | |||||
Sbjct 19852 CACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 19805
>seq2645
Length=47068
Score = 159 bits (176), Expect = 1e-34
Identities = 260/373 (70%), Gaps = 1/373 (0%)
Strand=Plus/Plus
Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635
||||| || | |||||| || | ||||||||||||| | || |||| ||| |
Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474
Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695
| ||||| | || || | ||||| || | ||| || || || || |||||||| ||
Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534
Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755
|| | | |||||||||||| |||||||| || || | ||||| | || | ||
Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594
Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815
| || || |||||||| || ||||||||||| |||| | || || ||||||||||||
Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654
Query 36816 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 36875
|||||||| ||||| || ||||| || || | || || || | |||| | | ||
Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 45713
Query 36876 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 36935
|| || | | ||||||||| | ||||||||||| || | || || || || | ||
Sbjct 45714 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 45773
Query 36936 CTTGTAACCCAGT 36948
|| || | |||||
Sbjct 45774 CTAGTTATCCAGT 45786
Score = 156 bits (172), Expect = 1e-33
Identities = 259/373 (69%), Gaps = 1/373 (0%)
Strand=Plus/Minus
Query 36576 ATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 36635
||||| || | |||||| || | ||||||||||||| | || |||| ||| |
Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351
Query 36636 ATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCG 36695
| ||||| | || || | ||||| || | ||| || || || || |||||||| ||
Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291
Query 36696 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGG 36755
|| | | |||||||||||| |||||||| || || | ||||| | || | ||
Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231
Query 36756 ACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 36815
| || || ||||||| || ||||||||||| |||| | || || ||||||||||||
Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171
Query 36816 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 36875
|||||||| ||||| || ||||| || || | || || || | |||| | | ||
Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 1112
Query 36876 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 36935
|| || | | ||||||||| | ||||||||||| || | || || || || | ||
Sbjct 1111 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 1052
Query 36936 CTTGTAACCCAGT 36948
|| || | |||||
Sbjct 1051 CTAGTTATCCAGT 1039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150433982209512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |