Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq9 214 5e-51 seq3095 196 1e-45 seq2645 161 3e-35 seq748 136 1e-27 >seq9 Length=772998 Score = 214 bits (236), Expect = 5e-51 Identities = 292/406 (72%), Gaps = 14/406 (3%) Strand=Plus/Plus Query 5617 AGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAA 5676 ||| ||||| | |||||| || |||||||||||||| ||||| ||| ||| |||||| | Sbjct 515588 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 515647 Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||||||||| ||||||||| |||| || | ||||||||||||| ||||||||| || || Sbjct 515648 CATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 515707 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | |||||| | || || || | |||| || || | ||| || ||||||| ||| || Sbjct 515708 AATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGAAACAGGAGCTGAATTTGCAACAG 515766 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || |||| || | | | || |||||||||| | || |||| ||| | Sbjct 515767 CAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAG 515826 Query 5856 CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATT 5915 | | ||||| | |||||| | || | || | || || || |||||||| | ||||| Sbjct 515827 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 515886 Query 5916 CATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 |||| ||| || |||||| || || || || || |||| | |||||| Sbjct 515887 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTTGGA----- 515936 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 | || ||| || || || || ||||||||||| |||| ||| || Sbjct 515937 --AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 515980 >seq3095 Length=35243 Score = 196 bits (216), Expect = 1e-45 Identities = 331/476 (70%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 5712 TACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCG 5770 || ||||| |||||||| || || | ||||| | || || || | ||||| | || Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG-CAGCT 20210 Query 5771 GCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGT 5830 ||||| || ||||||||||| || |||||| || ||||| || | | | |||||||| Sbjct 20209 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGT 20150 Query 5831 TCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGG 5890 ||||| | || |||| ||| || | ||||| | |||||| | || | || | Sbjct 20149 TCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 20090 Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || |||||||| | ||| ||||| | | || ||||||||| | || ||| Sbjct 20089 TAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAG 20034 Query 5951 TGTAACCCAATTGC----GTTGGAGCTGGGTACAACGGCTCCTGA-----TATGATGTTG 6001 || || || || || | | || | || | || ||| || || ||| || ||| Sbjct 20033 TGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTG 19974 Query 6002 TTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGT 6061 |||||||| |||| ||| || | || || ||||| || || || || || ||||| || Sbjct 19973 TTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGG 19914 Query 6062 GCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAG 6121 ||||| | ||| || | |||||| ||| ||||||||| || | | || ||||| || Sbjct 19913 GCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 19854 Query 6122 ACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||| ||||| || | || || ||||| | ||||||||| | ||||| ||||| Sbjct 19853 ACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19798 >seq2645 Length=47068 Score = 161 bits (178), Expect = 3e-35 Identities = 273/392 (70%), Gaps = 5/392 (1%) Strand=Plus/Plus Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGC 5856 |||||| || ||||| || | | | ||||||||||||| | || |||| ||| || Sbjct 45414 AATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 45473 Query 5857 GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTC 5916 | ||||| | ||| || | || | || | || || || |||||||| | |||||| Sbjct 45474 TACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 45533 Query 5917 ATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTG 5974 ||| | ||| || |||||||| || || || || || || || || | || | Sbjct 45534 ATCAAATGAT--GCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTA 45591 Query 5975 GGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCA 6034 || | || ||| || || || || ||||||||||| |||||||| || | || || ||| Sbjct 45592 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCA 45651 Query 6035 CGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTT 6094 || || || || || || ||||| || || || | ||| || | |||||| ||| |||| Sbjct 45652 CGAATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTT 45710 Query 6095 GCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTG 6154 | ||| || | | || ||||| || || |||||||| || | || || || || | | Sbjct 45711 GTGGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCG 45770 Query 6155 GTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 |||||||| | ||||| ||||| | | |||| Sbjct 45771 GTGCTAGTTATCCAGTTGCAGAAGTGACCCCA 45802 Score = 158 bits (174), Expect = 4e-34 Identities = 272/392 (69%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGC 5856 |||||| || ||||| || | | | ||||||||||||| | || |||| ||| || Sbjct 1411 AATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 1352 Query 5857 GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTC 5916 | ||||| | ||| || | || | || | || || || |||||||| | |||||| Sbjct 1351 TACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 1292 Query 5917 ATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTG 5974 ||| | ||| || |||||||| || || || || || || || || | || | Sbjct 1291 ATCAAATGAT--GCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTA 1234 Query 5975 GGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCA 6034 || | || ||| || || | || ||||||||||| |||||||| || | || || ||| Sbjct 1233 GGAATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCA 1174 Query 6035 CGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTT 6094 || || || || || || ||||| || || || | ||| || | |||||| ||| |||| Sbjct 1173 CGAATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTT 1115 Query 6095 GCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTG 6154 | ||| || | | || ||||| || || |||||||| || | || || || || | | Sbjct 1114 GTGGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCG 1055 Query 6155 GTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 |||||||| | ||||| ||||| | | |||| Sbjct 1054 GTGCTAGTTATCCAGTTGCAGAAGTGACCCCA 1023 >seq748 Length=127770 Score = 136 bits (150), Expect = 1e-27 Identities = 130/165 (79%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 5581 ATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 5640 |||||||||| ||| | | || |||||||| ||||| ||||| | ||||| || || Sbjct 126567 ATGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGG 126625 Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 |||| ||||||| ||||| | |||||||||||| | ||||||||| |||||||||||||| Sbjct 126626 ATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGAT 126685 Query 5701 ACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTA 5745 || | || |||||||| | |||||||| || || |||||| Sbjct 126686 TCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTA 126730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152628884304408