Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq9 230 7e-56 seq3095 203 1e-47 seq2645 147 7e-31 seq1688 80.6 8e-11 >seq9 Length=772998 Score = 230 bits (254), Expect = 7e-56 Identities = 311/434 (72%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 25935 || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || |||| | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 25936 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||||| |||||||| || | || || | ||||||||||||||||||||| ||||| ||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 25996 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 26055 | |||||| | ||||| |||||| || |||| |||||| ||||||| || ||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || ||| || || | || |||||||||| | || |||| ||| | Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | | ||||| | ||||| || | ||| || ||||| || || ||||| || Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || || | |||||||||| |||||||| || || | || | ||| || Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GGA 515936 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || || || ||||| || ||||||||||| ||||| | || | | ||||||| || Sbjct 515937 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATGA 515996 Query 26296 ATACCATCTATATC 26309 |||||||| ||||| Sbjct 515997 ATACCATCAATATC 516010 >seq3095 Length=35243 Score = 203 bits (224), Expect = 1e-47 Identities = 326/468 (70%), Gaps = 13/468 (3%) Strand=Plus/Minus Query 25970 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 26029 || ||||||| ||||| ||||| |||| ||||| | ||||| |||||| || |||| Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 26030 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTT 26089 ||||||| |||||||| || ||| ||||| || | ||| || || | ||||||||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 26090 CCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGAT 26149 |||| | || |||| ||| | | || | | ||||| | ||||| || | || Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 26150 ATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGT 26209 | || || || || || |||||||| || | | ||||||||||||| |||| |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAGT 20033 Query 26210 GAAGACCGATTGCGTTAGATGACGGGACGATT----GCCCCTGAGATGATGT-----TGT 26260 | | ||||| || ||| | || | || | || || ||||| || | ||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 26261 TTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCG 26320 ||||||| ||||| | || || |||||||||||||||||||| ||||| || ||||| | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 26321 CAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTA 26380 |||| | || || || | |||| | | ||| || || | | ||||||||| | | Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAA 19853 Query 26381 CCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 | || ||||| || | || || ||||| | || || || | ||||| Sbjct 19852 CACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 19805 >seq2645 Length=47068 Score = 147 bits (162), Expect = 7e-31 Identities = 257/373 (69%), Gaps = 1/373 (0%) Strand=Plus/Plus Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || | ||| || || | ||||||||||||| | || |||| ||| | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | | || || | ||||| || | ||| || ||||| || || ||||| || Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || | | |||||||||||| |||||||| || || | ||||| | ||| | || Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || || || ||||| || ||||||||||| |||| | || || |||||||||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 26296 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 26355 |||||||| ||||| || ||||| || || | || || || | |||| | | || Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 45713 Query 26356 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 26415 || || | | ||||||||| | ||||||||||| || | || || || || | || Sbjct 45714 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 45773 Query 26416 CTTGTAACCCAGT 26428 || || | ||||| Sbjct 45774 CTAGTTATCCAGT 45786 Score = 141 bits (156), Expect = 3e-29 Identities = 256/373 (69%), Gaps = 1/373 (0%) Strand=Plus/Minus Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || | ||| || || | ||||||||||||| | || |||| ||| | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | | || || | ||||| || | ||| || ||||| || || ||||| || Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || | | |||||||||||| |||||||| || || | ||||| | ||| | || Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || || || |||| || ||||||||||| |||| | || || |||||||||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 26296 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 26355 |||||||| ||||| || ||||| || || | || || || | |||| | | || Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 1112 Query 26356 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 26415 || || | | ||||||||| | ||||||||||| || | || || || || | || Sbjct 1111 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 1052 Query 26416 CTTGTAACCCAGT 26428 || || | ||||| Sbjct 1051 CTAGTTATCCAGT 1039 >seq1688 Length=72660 Score = 80.6 bits (88), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| || || || ||||| || || || || || || || |||||||| | || Sbjct 24707 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 24766 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | ||| || | | || |||||||||||| ||||| |||||| ||| Sbjct 24767 TAAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGCC---AAGAAGTGTAAAGAACG 24823 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 25729 || || || |||||||| |||||||| | || ||||| || |||| Sbjct 24824 AGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCAT 24873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151972973328528