Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1689 105 5e-18 seq2252 87.8 1e-12 seq267 87.8 1e-12 >seq1689 Length=72926 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | || | ||||| ||||| || || || ||||||||||| || Sbjct 2108 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 2167 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| || ||||| || | ||||| || || || || Sbjct 2168 AATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGG 2227 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | ||||| || | || || Sbjct 2228 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 2287 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | || || || || | ||| || ||||| ||||||||| Sbjct 2288 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 2335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || ||||| || || | || | | | || || | ||| Sbjct 2360 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGTGTGCGGCCGTCTTCAAGCTGC 2419 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | ||| || || || || ||||| ||||| || ||||| ||| Sbjct 2420 TTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGAATCTTT 2479 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||| | || || || | || | || || || || Sbjct 2480 GCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAATGTTATTGTCTTTCCTGTA 2539 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 2540 AGGGTCTTCACAAATATCTGCAT 2562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || |||||||| || | || | | |||| || | ||| Sbjct 2816 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTCTAGCTGC 2875 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || || || ||||| ||||| || Sbjct 2876 TTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGTATACCCTCCTTATCCTGAATCTTG 2935 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | | | ||||| || | || || || ||||||| || ||||| || Sbjct 2936 GCCTTAACATTGTTGATCGTGTCCGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTC 2995 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 2996 AGTGTCTTGACGAATATCTGCAT 3018 >seq2252 Length=53314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || |||||||| || || ||||| || | ||||| |||| ||| Sbjct 37763 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCC 37822 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 37823 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 37882 Query 101381 A 101381 | Sbjct 37883 A 37883 >seq267 Length=213022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || |||||||| || | ||||| |||| ||| Sbjct 31472 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATCTTCC 31531 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 31532 AATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 31591 Query 101381 A 101381 | Sbjct 31592 A 31592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396223206839796