Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5287 102 6e-17 seq1507 100 2e-16 seq267 98.7 8e-16 seq1785 91.5 1e-13 seq2976 89.7 4e-13 seq2252 89.7 4e-13 seq951 87.8 1e-12 seq238 87.8 1e-12 seq1689 86.0 5e-12 seq84 82.4 6e-11 >seq5287 Length=9303 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 5411 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 5352 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||||||||| || ||||| ||||| || |||| | Sbjct 5351 CGAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCG 5292 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 5291 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 5232 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| ||| ||||| || ||||||| || || || || |||||||| Sbjct 5231 CCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 5183 >seq1507 Length=80756 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 30616 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 30557 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| | Sbjct 30556 CGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGCG 30497 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 30496 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 30437 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||||| || || || || ||||||||| || Sbjct 30436 CCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 30384 >seq267 Length=213022 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||| || ||||| |||||| ||||| |||||||||| | Sbjct 31454 CCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 31513 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 31514 AACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 31573 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 31574 ATGCCCTCCTTGTC 31587 >seq1785 Length=68507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| || || ||||| ||||| || | || | || Sbjct 65333 AGGCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGG 65274 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| ||||| ||||| || |||| || | ||||||| Sbjct 65273 CCATCCTCCAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCC 65214 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | | || || | ||||||||| | || Sbjct 65213 TTGTCCTGGATCTTTGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTG 65154 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 65153 ATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 65116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| || ||||| || || || ||| || || || ||||| |||| Sbjct 64659 GCCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 64600 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| ||||| || ||||| || || ||||| ||||||| ||| Sbjct 64599 AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGG 64540 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 64539 GATGCCCTCCTTGTC 64525 >seq2976 Length=39079 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 26504 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 26445 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 26444 CCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 26385 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 26384 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTG 26325 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||||| || || || || ||||||||| || Sbjct 26324 ATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 26283 >seq2252 Length=53314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| || ||||| || || || |||||||||||| || ||||||| | Sbjct 37745 CCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCT 37804 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 37805 AATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 37864 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 37865 ATGCCCTCCTTGTC 37878 >seq951 Length=113133 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 26805 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 26746 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| || || || || || ||||| || |||| | Sbjct 26745 CGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 26686 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 26685 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 26626 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 26625 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 26573 >seq238 Length=227787 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| |||| || | || Sbjct 50262 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGG 50321 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 50322 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 50381 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||||| || Sbjct 50382 TTGTCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTG 50441 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || |||||||||||||| Sbjct 50442 ATGGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 50479 >seq1689 Length=72926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| | | || | || || | ||||| || ||||| Sbjct 2143 CTCCTTCTGGATATTGTAATCAGCCAATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAA 2202 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||||||| || || | || | |||||||||||| |||||| || ||| Sbjct 2203 GATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 2262 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||| | ||||| || ||||| || | ||| || || Sbjct 2263 ATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCAC 2322 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 2323 AAAGATCTGCAT 2334 >seq84 Length=349560 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || ||| ||| || || || ||||| |||| Sbjct 21528 GCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 21469 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| || || || |||| | ||| || |||| ||| Sbjct 21468 AAGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 21409 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 21408 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCAC 21349 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || || | || || ||||| |||||||| Sbjct 21348 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 21301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380884543487244