Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq9 196 5e-45 seq3095 181 1e-40 seq2645 163 3e-35 seq1688 136 4e-27 seq748 118 1e-21 >seq9 Length=772998 Score = 196 bits (216), Expect = 5e-45 Identities = 333/480 (69%), Gaps = 22/480 (5%) Strand=Plus/Minus Query 162584 CAACTTGCT--TCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 |||||| || | || || || ||||| ||||| |||| | ||||| |||||||| Sbjct 516051 CAACTTCCTATTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCA 515994 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || ||| || ||||| | || ||||| ||||| || ||||||||||| | Sbjct 515993 TGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CA 515941 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 | ||| || | |||| || || || || || |||||| ||| |||||||||| Sbjct 515940 TTTTTCCAACTCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGA 515886 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 ||||| || |||||||| |||| | || | || | |||||| | | || | Sbjct 515885 ATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT--- 515829 Query 162822 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 ||| | | | |||||| ||||||||||| || | | | ||||||| ||||||||| Sbjct 515828 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 515769 Query 162879 CTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTT 162938 ||||||| | || || || || || || || ||||| |||||| | || ||| | Sbjct 515768 TGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 515709 Query 162939 CGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACAT 162998 |||||||| ||||||||| | |||||| | || || | ||||||||| |||| || Sbjct 515708 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTAT 515649 Query 162999 GTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGC 163058 | | || ||| | | ||||||||||||||| ||||| || || || ||| | || || || Sbjct 515648 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 181 bits (200), Expect = 1e-40 Identities = 303/436 (69%), Gaps = 19/436 (4%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 19838 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 19897 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 19898 TCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 19957 Query 162659 CACTTCTCTATGGTAACA-----ACATCATCTCTGGTGC----TGTCGTTCCTAGTTCAA 162709 | | || ||||| |||| | || ||||||||||| || | |||| ||| Sbjct 19958 CTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTG 20017 Query 162710 ATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGT 162769 || || || | ||||| || | ||||||||| ||| || ||||||||||||| | Sbjct 20018 CGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTAT 20073 Query 162770 ATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACT 162829 | ||||| || |||| | || | || | |||||| | | || | ||| | | Sbjct 20074 ACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTT 20130 Query 162830 GT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTG 162886 | |||||| ||||||||||| || ||| | ||||||||||||||||| ||||| Sbjct 20131 ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG 20190 Query 162887 CATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAG 162946 |||| || || || || | || || ||||| |||||| | | ||| | ||||||| Sbjct 20191 CATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAG 20250 Query 162947 GTTCTTTCTCTGACGC 162962 | ||| ||||| || Sbjct 20251 GAAGTTTTTCTGATGC 20266 >seq2645 Length=47068 Score = 163 bits (180), Expect = 3e-35 Identities = 253/359 (70%), Gaps = 7/359 (2%) Strand=Plus/Minus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 || ||||| | || |||| ||||| || || |||||||||||| ||| | | || Sbjct 45769 GAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACA 45710 Query 162583 GCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGA 162642 | || || || || || ||||| ||||| |||||||| ||||| |||||||| | Sbjct 45709 ACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGT 45651 Query 162643 GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT 162702 || |||||| | ||||| || || ||||| ||||| || ||||||||||| | ||||| Sbjct 45650 GAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 45591 Query 162703 AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAG 162762 | ||| | || || | || || || || || |||||||| ||| | ||||||| Sbjct 45590 ACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAA 45531 Query 162763 TGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 162822 ||||| || |||||||| |||| | || | || | || ||| | | || | | Sbjct 45530 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGT---A 45474 Query 162823 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 || | | | |||||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 45473 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 158 bits (174), Expect = 1e-33 Identities = 252/359 (70%), Gaps = 7/359 (2%) Strand=Plus/Plus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 || ||||| | || |||| ||||| || || |||||||||||| ||| | | || Sbjct 1056 GAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTACCTTATTGACCACA 1115 Query 162583 GCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGA 162642 | || || || || || ||||| ||||| |||||||| ||||| |||||||| | Sbjct 1116 ACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGT 1174 Query 162643 GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT 162702 || |||||| | ||||| || || ||||| ||||| || |||||||||| | ||||| Sbjct 1175 GAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCT 1234 Query 162703 AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAG 162762 | ||| | || || | || || || || || |||||||| ||| | ||||||| Sbjct 1235 ACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAA 1294 Query 162763 TGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 162822 ||||| || |||||||| |||| | || | || | || ||| | | || | | Sbjct 1295 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGT---A 1351 Query 162823 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 || | | | |||||| ||||||||||| || ||| | ||||||||||||||||| Sbjct 1352 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 136 bits (150), Expect = 4e-27 Identities = 132/169 (78%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 163205 ATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTC 163264 |||| || |||||||| || |||||||| ||||| |||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 163265 ACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAA 163324 ||||||| ||||| | ||||| | | |||||||||||||| | ||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 163325 CTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 |||||||||||||||| || |||||||| ||||||||||| || ||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 >seq748 Length=127770 Score = 118 bits (130), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| ||| ||| | | ||| || | || || ||||||||||| |||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA 163059 | || ||||| ||| ||||||||||||| | ||| || || || || | || || || Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 163060 GGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTT 163119 ||||||||||| ||||| || || ||||||||||| |||| | || || ||| | | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 163120 ATCAGAGAAACTACTGA 163136 |||| || || ||||| Sbjct 126542 CTCAGGGAGACCACTGA 126526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553005791836320