Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq3095 192 7e-44 seq2645 167 3e-36 seq1688 120 3e-22 seq748 109 6e-19 >seq9 Length=772998 Score = 197 bits (218), Expect = 2e-45 Identities = 336/483 (70%), Gaps = 17/483 (4%) Strand=Plus/Minus Query 162974 CAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCC 163033 ||||| || ||| || |||||||| |||| ||| || | || ||||| || || | Sbjct 516051 CAACTTCCTATTT-ATTATCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTC 515995 Query 163034 GTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTC 163093 |||||| | |||||| | | ||||| ||||| || ||||||||||| || ||| Sbjct 515994 ATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTC 515935 Query 163094 CATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATG 163153 || || | |||| || || || || || |||||| ||||| ||||||| Sbjct 515934 CAACT-------CGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATG 515887 Query 163154 AGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCT 163213 | ||| | || || |||||||||| | || | || | |||||| | | || | Sbjct 515886 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 515827 Query 163214 ATGCATATATGGGACGTGAATGGGAACTTTCATATCGCT-TAGGTATGCGCCCCTGGATC 163272 | |||||||| ||||| ||||||||| || || | | ||||||| || ||||| Sbjct 515826 CTTGTTATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATCCTTGGATT 515768 Query 163273 TGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTC 163332 ||| ||| | || || |||||| |||| || | || || ||| || | || ||| | Sbjct 515767 GCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 515708 Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 |||||||| ||||||||| | ||||| | || |||| ||| || ||||||| ||| Sbjct 515707 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATG 515648 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452 |||| ||| | | ||||||||||||||| ||||| || || || ||||| || || ||| Sbjct 515647 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 Query 163453 GGT 163455 || Sbjct 515587 TGT 515585 >seq3095 Length=35243 Score = 192 bits (212), Expect = 7e-44 Identities = 329/474 (69%), Gaps = 15/474 (3%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| | | ||||| ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 163071 CATCAT-----CTCTGGTGCAGTTGTTCCATCTTCCAAC----GCAATTGGTCTTCACTT 163121 || || ||||||||| || |||| | | | | || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 163122 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 163181 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 163182 ACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACT 163241 || | || | |||||| | | || | | |||||||| ||||| |||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 163242 TTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGC 163301 | | || | |||||||| || ||||| ||| ||||| || || ||||||||||| Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 163302 AGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGC 163355 || | || || ||| || | | ||| | |||||||| ||| ||||| || Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq2645 Length=47068 Score = 167 bits (184), Expect = 3e-36 Identities = 268/381 (70%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | ||||| ||||| || || |||||||| |||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| || | ||||| ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| |||||| ||||||| ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | || ||| | | || | | |||||||| ||||| ||||||||| | || Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 163251 CTTAGGTATGCGCCCCTGGAT 163271 | |||||||| || ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 >seq1688 Length=72660 Score = 120 bits (132), Expect = 3e-22 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 163598 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTC 163657 |||| || || ||||| || |||||||||||||| ||||||||| | | | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 163658 ACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCA 163717 ||||||| ||| || |||||||| | || |||||||| ||||| | || | || | Sbjct 24813 ACTTCTT---GGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 163718 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 163777 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 163778 GTGTGCTCAACACTTGGGCAGA 163799 | | | || |||||||| || Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 109 bits (120), Expect = 6e-19 Identities = 152/209 (73%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 |||||||| ||| ||| | | ||| | | || |||||||| || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452 |||| ||||| ||| ||||||||||||| | ||| || || || || || || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 163453 GGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGT--CTT-GTTACCTCTTCA 163509 ||||| ||||| || || || ||| || |||||| ||| ||| || |||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT---AGTTCCTTGGTAACCTCTAGT 126546 Query 163510 CTCGTCCGTGAGACGACTGAAACTGAGTC 163538 | || | ||||| ||||||||||| || Sbjct 126545 TTGCTCAGGGAGACCACTGAAACTGAATC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563129145508640