Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2074 219 8e-52 seq1824 217 3e-51 seq3589 210 4e-49 >seq2074 Length=58204 Score = 219 bits (242), Expect = 8e-52 Identities = 576/870 (66%), Gaps = 33/870 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 21520 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTC 21579 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCAT--CTGTTCCA 47954 ||| || ||| || |||| ||| |||| | | ||| | |||| | || | Sbjct 21580 CATCCAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGT--GCCCCAAAGCCATT--A 21635 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||||| | || |||||| |||||| ||| | ||| || | ||||||||| | || Sbjct 21636 GCAGGCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGA 21695 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| | || | || ||||| ||| || | ||||| || | || | Sbjct 21696 GTGCGCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGA 21755 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 ||| ||||||||||| | ||| ||| ||| | | | ||||| | ||| | Sbjct 21756 TCTCGCGGACGCGGGACTCGTCCAGCTTGACGCGGAGGAGGTCG---TAGAGAAGGCACG 21812 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || | Sbjct 21813 CGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCTG 21872 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| ||| | | ||||||||||| || || ||| ||||| ||||||||||||| Sbjct 21873 GCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAGATGC 21932 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 |||| || ||||||||| || | |||| | |||||| || | | |||| Sbjct 21933 CCTCGACGCAGGCGAACGCGACAAGACGCTCTGC----GAAGCGCTCGCCGCCCTCGATC 21988 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCG 48369 ||| | | ||| || ||||| | ||| ||| | |||||||||||| || Sbjct 21989 CAGCGCATGGTCCACTCGGCCTT----GCGGCGCACGGCGGGGACCGTCTCTATGGCGCG 22044 Query 48370 GAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||||||| | ||| ||| | |||| | ||||| |||||| | ||| Sbjct 22045 GAAGAGCCGGTCCTT---CTCCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTA 22101 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||| |||||||| || | ||||| Sbjct 22102 CATCTCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGC 22161 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||| || || | ||| | | | ||| ||||| || || || || || || Sbjct 22162 GACCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGC 22221 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATT 48603 || |||||||| || || || | ||| |||||||||| | |||| || | Sbjct 22222 GGCGAAGAAGGCGAGAACGTGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTC 22281 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | ||||| | |||||||| || || | |||||||| || || | || Sbjct 22282 CCAGTGCCGCACGTCGGCGGAGAGGTCCACCTCCTCGGCGGTCCAGAACGAAGCCACGGC 22341 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||||| | |||| || | ||| || Sbjct 22342 CTTCTTGTAGAACTCCCAGATCTGCGGGTA 22371 >seq1824 Length=71116 Score = 217 bits (240), Expect = 3e-51 Identities = 558/845 (66%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | ||||| ||| Sbjct 41402 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTC 41461 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| || ||| |||||| ||| |||| | | | |||||| | ||||| Sbjct 41462 CATCCAGTCGAACGGGTTGACGACGTTGTACATCTTTTTGTGGCCCAGCGCCATGAGCAG 41521 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || |||||| |||||||||| | |||||| | ||||||||| | || | Sbjct 41522 GCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGC 41581 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | || | || ||||| |||||| | ||||| || | || |||| Sbjct 41582 GCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATGTCGACGGCGTCGGCGACTATCTC 41641 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 ||||| ||||| | | ||| ||| || | | ||||| | ||||||||| Sbjct 41642 GCGGACGCGCGACTCGTCGAGCTTGACGCGGAGAACGTCG---TAGAGGAGGCAGGCAAA 41698 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| | ||||| || ||||| ||| ||||||| |||||||||| ||| || ||||| Sbjct 41699 GTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCAT 41758 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | | ||||||||||| || || |||||| || || |||||||||||||| Sbjct 41759 GAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCTC 41818 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCAGG 48317 || ||||||||| ||||| ||| | |||||| ||| | | ||||||| Sbjct 41819 GACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCTCCGCCCTCGATCCAGC 41874 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGAA- 48372 | ||||| || ||||| | ||| ||| | ||||||||||| ||||| Sbjct 41875 GCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAAC 41930 Query 48373 --GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 | | | ||| ||| | |||| | ||||| |||||| | ||||||| Sbjct 41931 AGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATC 41987 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| ||||| ||||| | ||||| |||| Sbjct 41988 TCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCTCGCGCCTCGGCCACC 42047 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || || || | ||| | | | ||| ||||| ||||| || || || || || Sbjct 42048 TGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGGCG 42107 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAG 48607 ||||| || || || || | ||| |||||||||| | || |||| || | |||| Sbjct 42108 AAGAAAGCTAGCACGTGGGCGATGAAGTGGCGCTCGTCGGGGTTGAGCGCGGCGTCCCAG 42167 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | |||| | |||||||| || || | |||||||| ||||| | || || Sbjct 42168 TGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAACGACGCCACCGCCTTC 42227 Query 48668 TTGTA 48672 ||||| Sbjct 42228 TTGTA 42232 >seq3589 Length=27756 Score = 210 bits (232), Expect = 4e-49 Identities = 559/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| | ||||| ||| Sbjct 16583 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTC 16642 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| | |||| | ||| Sbjct 16643 CATCCAGTCGAACGGGTTGGCCACGTTGTACATCTTCTTGTGA--CCCAGCGCCATGAGC 16700 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | || Sbjct 16701 AGGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGC 16760 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || ||||| |||||| | ||||| || | || ||| Sbjct 16761 GCGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATC 16820 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| ||||| | | ||| ||| || | | | ||||| | ||| ||| Sbjct 16821 TCGCGGACGCGCGACTCGTCGAGCTTGACGCGGAGAAGATCG---TAGAGGAGGCACGCA 16877 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| || ||||| ||| ||||||| |||||||||| ||| || ||| Sbjct 16878 AAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGC 16937 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | | ||||||||||| || || |||||| || || |||||||||||| Sbjct 16938 ATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCC 16997 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||||| ||| | |||||| || | | |||||| Sbjct 16998 TCGACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCA 17053 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | ||||| || ||||| | ||| ||| | ||||||||||| |||| Sbjct 17054 GCGCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGA 17109 Query 48372 A---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | | | | ||| ||| | |||| | ||||| |||||| | ||||| Sbjct 17110 ACAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 17166 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||| ||||| | ||||| || Sbjct 17167 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCA 17226 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | | | ||| ||||| ||||| || || || || | Sbjct 17227 CCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACTATGCCGTCGGAGGCGG 17286 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| || || || || | ||| |||||||||| | || |||| || | || Sbjct 17287 CGAAGAAAGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGTTGAGCGCGGCGTCCC 17346 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | |||||||| ||||| | || | Sbjct 17347 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAACGACGCCACCGCCT 17406 Query 48666 TTTTGTA 48672 | ||||| Sbjct 17407 TCTTGTA 17413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931399730539520