Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1824 190 4e-43 seq3589 178 2e-39 seq2074 147 4e-30 >seq1824 Length=71116 Score = 190 bits (210), Expect = 4e-43 Identities = 399/576 (69%), Gaps = 24/576 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 42244 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTC 42185 Query 25537 GCCAAGGACATGGACGGCTGGTACGC-----TCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | | |||| |||| || | || ||||||| || || || Sbjct 42184 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTCAACCCC--GACGAGCGCCACTTCATCG 42127 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || ||||| || || |||||| |||||| ||| ||| | Sbjct 42126 CCCACGTGCTAGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTG-GCGTCG 42068 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| | ||||| | || ||| ||||| |||||||| || Sbjct 42067 CGGTTCATGTCCGACGTCCAGGTGGCCGAGGCGCGAGCCTTT-TACGGCTTCCAGATCGC 42009 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 42008 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 41949 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || ||||| | ||||| ||| | | ||| | | | ||||| Sbjct 41948 CGCCGAGAAGGACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGC 41889 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCC-AGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| | || |||||||| || ||||||||| || | Sbjct 41888 CGAGTGGGCCATGCGCTGGATCGAGGGCGGAGAGCGCTTCGC----CGAGCGGCTCGTCG 41833 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| || || || || |||| ||||||||||||| Sbjct 41832 CGTTCGCCTGC-GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCG-CCATCTTCTGGCT 41775 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | | || | |||||| || || ||||| ||||||||||||||| | | ||| Sbjct 41774 CAAGAA-ACGCGGCCTCATGCCGGGCCTC-ACTTTCTCCAACGAGCTCATCTCCCGCGAC 41717 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| ||| | || ||||||||||| |||||| Sbjct 41716 GAGGGTCTGCACTGCGACTTTGCCTGCCTCCTCTAC 41681 >seq3589 Length=27756 Score = 178 bits (196), Expect = 2e-39 Identities = 396/576 (69%), Gaps = 24/576 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 17425 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTC 17366 Query 25537 GCCAAGGACATGGACGGCTGGTACGC-----TCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | | |||| |||| || | || ||||||| || || || Sbjct 17365 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTCAACCCC--GACGAGCGCCACTTCATCT 17308 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || ||||| || || |||||| |||||| ||| ||| | Sbjct 17307 CCCACGTGCTCGCTTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTG-GCGTCG 17249 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| | ||||| | | ||| ||||| |||||||| || Sbjct 17248 CGGTTCATGTCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTT-TACGGCTTCCAGATCGC 17190 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 17189 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 17130 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || ||||| | ||||| ||| | | ||| | | | ||||| Sbjct 17129 CGCCGAGAAGGACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGC 17070 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| | || ||||||| || ||||||||| || | Sbjct 17069 CGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCG 17014 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| || || || || |||| ||||||||||||| Sbjct 17013 CGTTCGCCTGC-GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCG-CCATCTTCTGGCT 16956 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | | || | |||||| || || ||||| ||||||||||||||| | | ||| Sbjct 16955 CAAGAA-ACGCGGCCTCATGCCGGGCCTC-ACTTTCTCCAACGAGCTCATCTCCCGCGAC 16898 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| ||| | || ||||| ||||| |||||| Sbjct 16897 GAGGGTCTGCACTGCGACTTTGCGTGCCTCCTCTAC 16862 >seq2074 Length=58204 Score = 147 bits (162), Expect = 4e-30 Identities = 386/574 (67%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 22362 ATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCTGGACCGCCGAGGAGGTGGACCTC 22303 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAG---ACGAGCAGCATTTTCTCA 25591 || ||| || |||| ||| |||| ||| | |||||| || || || Sbjct 22302 TCCGCCGACGTG--CGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCACTTCATCT 22245 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 |||| | || ||||| || || || || || || ||| |||||| ||| ||| | Sbjct 22244 CCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCTG-GCGTCG 22186 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| || ||||| | | ||| |||||| |||||||| || Sbjct 22185 CGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCGTT-CTACGGCTTCCAGATCGC 22127 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 ||| || || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 22126 CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 22067 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| |||| || ||||| || | ||||| ||| | ||| | | | ||||| Sbjct 22066 CGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTGCGCCGCAAGGC 22007 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||| ||||| |||||| | || ||||||| || ||||| || || | Sbjct 22006 CGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGCA----GAGCGTCTTGTCG 21951 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| ||| || ||||| |||| ||||||||||||| Sbjct 21950 CGTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCG-CCATCTTCTGGCT 21893 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| | ||| |||||| || || ||| ||||||||||||||| | | ||||| Sbjct 21892 CAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 21833 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| || ||| | || || || ||||| |||||| Sbjct 21832 GGGCCTGCACTGCGACTTCGCGTGCCTTCTCTAC 21799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928712114520320