Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq9 286 4e-72 seq3095 241 1e-58 seq2645 194 2e-44 seq748 140 3e-28 seq1688 98.7 1e-15 >seq9 Length=772998 Score = 286 bits (316), Expect = 4e-72 Identities = 346/471 (73%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| ||| ||| | || ||| ||| | || || || || || | || || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 ||| ||| | | || || ||||| || ||||||||||| || |||| ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 515931 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 | |||| || || ||||| || |||||| || ||||||||||| ||| | ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATG 8580 || ||||||||||| |||| | ||| | |||||| | ||||| || | ||||||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||||||| ||||||||| || | | || || |||| ||||||||| ||||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || ||||||||| | |||||| ||||||| ||| | | || ||| |||||||||| Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 |||||||||||||||||| | || |||| ||||| ||||||| |||| |||| ||| || Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 | |||||||||||||| ||||| || || |||||| | ||||| ||| || Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq3095 Length=35243 Score = 241 bits (266), Expect = 1e-58 Identities = 317/436 (73%), Gaps = 15/436 (3%) Strand=Plus/Plus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATT 8346 |||| ||||| || ||| | |||||||| ||| || ||| |||| || | || ||| Sbjct 19838 TCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATT 19896 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| Sbjct 19897 ATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 19956 Query 8407 TCTCTCATGTACGGTAACAACATCAT-----CTCTGGTGCAGTTGTTCCCAGCT----CT 8457 ||| | | || || ||||| || || ||||||||| || |||| | || || Sbjct 19957 TCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCT 20016 Query 8458 AACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTC 8517 || || || | ||||| ||||| |||||||| || ||| ||||||||||| | Sbjct 20017 GCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTA 20072 Query 8518 TACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTAT 8577 ||||| || |||||||| |||| | ||| | |||||| | ||||| || | |||| Sbjct 20073 TACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTAT 20132 Query 8578 ATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCA 8637 ||||||||||| ||||||||| || ||| || || |||||||||||||| ||||||| Sbjct 20133 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 20192 Query 8638 TACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGT 8697 || || ||||||||||| |||||| ||||||| ||| | | | ||| |||||||||| Sbjct 20193 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGA 20252 Query 8698 TCGTTCTCTGATGGTA 8713 || ||||||| || Sbjct 20253 AGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 194 bits (214), Expect = 2e-44 Identities = 274/381 (72%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||| | ||| | ||| ||| | ||||| | || |||| |||||||| ||| | Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 8308 ATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| ||| || ||| || | || | || |||| ||| ||| | || || || Sbjct 45733 ATGATCCCTACC-TTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||| || || || || || || || || || ||| |||| ||||| | || || ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 || ||||||||||| || |||| | ||| | || || | || || ||||| || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| || || ||||||| ||| | ||||| ||||||||||| |||| | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | | || ||| | ||||| || | ||||||||||||||| ||||||||| || ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 8607 CCTTGGCATGCGTCCTTGGAT 8627 || || |||||||||||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 190 bits (210), Expect = 2e-43 Identities = 273/381 (72%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||| | ||| | ||| ||| | ||||| | || |||| |||||||| ||| | Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 8308 ATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| ||| || ||| || | || | || |||| ||| ||| | || || || Sbjct 1092 ATGATCCCTACC-TTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||| || || || || || || || || || ||| |||| ||||| | || || ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 || |||||||||| || |||| | ||| | || || | || || ||||| || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| || || ||||||| ||| | ||||| ||||||||||| |||| | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | | || ||| | ||||| || | ||||||||||||||| ||||||||| || ||| Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 8607 CCTTGGCATGCGTCCTTGGAT 8627 || || |||||||||||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 140 bits (154), Expect = 3e-28 Identities = 162/217 (75%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 8679 CTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTT 8738 ||| ||| ||||||||| || ||| |||||||| || | || ||||| ||||| || Sbjct 126731 CTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTT 126672 Query 8739 CAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCT 8798 ||||| |||| |||| |||||||| ||||||||||||| | ||| || || ||||| | Sbjct 126671 CAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTT 126612 Query 8799 TGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTAC 8858 ||||| |||||||| |||||||| || || || || |||||| |||| | || || Sbjct 126611 AGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAAC 126553 Query 8859 TTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCT 8895 ||| || | | |||||||| ||||| || ||| Sbjct 126552 CTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATCT 126516 >seq1688 Length=72660 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 8954 ATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGC 9013 |||| || |||||||| || |||||||||||||| ||| ||||| ||| | || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 9014 ATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGA 9073 | |||| | ||||| |||||||| | || |||||||| || || | || | | Sbjct 24813 A---CTTCTTGGCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 9074 CCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTC 9113 | ||||| |||||||| ||||| ||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516406220832000