Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2715 113 3e-19 seq201 113 3e-19 seq763 109 4e-18 seq1422 105 4e-17 seq79 100 2e-15 seq84 93.3 3e-13 seq238 91.5 1e-12 seq1709 89.7 3e-12 seq1689 89.7 3e-12 seq22 89.7 3e-12 seq4465 87.8 1e-11 seq2252 87.8 1e-11 >seq2715 Length=43111 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || |||||||||||||| || ||||| ||| | |||||| |||||||| Sbjct 21932 GCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAACAAAAGATGCT 21991 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | |||||||| ||||||||||| || || |||| Sbjct 21992 GGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTGCTGCATCACTG 22051 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| |||| ||||| Sbjct 22052 GCCTATGGTTTTGAGAAGAA 22071 >seq201 Length=241772 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| |||||||||||||| |||||||| ||| | |||||| |||||||| Sbjct 140124 GCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAAAAGATGCT 140065 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| || |||||||| || || || | Sbjct 140064 GGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTGCATCATTG 140005 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| |||| ||||| Sbjct 140004 GCTTATGGCTTTGAGAAGAA 139985 >seq763 Length=128940 Score = 109 bits (120), Expect = 4e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | || ||||| || || |||||||| Sbjct 42258 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCA 42199 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||||| |||| | | ||||||||||||||||| ||||| || || Sbjct 42198 GGCCGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTG 42139 Query 474857 GCTTATGG 474864 ||||||| Sbjct 42138 TCTTATGG 42131 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 |||||| ||||||||||| ||||| ||| ||||| ||||| ||||| | | ||| Sbjct 42145 AGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCAATGCGGCCTGCATC 42204 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | || ||||| || ||||||||||| |||||||| || || ||||| ||||| || Sbjct 42205 TTTTGTGGCCTGACGCTGCGCATCATTGAAATAAGCTGGAACAGTAATCACAGCCTT 42261 >seq1422 Length=85827 Score = 105 bits (116), Expect = 4e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | || |||||||| || || ||||| Sbjct 61331 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCACAGCGTCAAGCCACAAAGGATGCA 61272 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || || ||||| | | || || ||||||||||||||||| || || Sbjct 61271 GGTCGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTG 61212 Query 474857 GCTTATGG 474864 ||||||| Sbjct 61211 TCTTATGG 61204 >seq79 Length=360181 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||||||||||| || ||| |||| |||||||| || || ||||| Sbjct 309918 GCAGTGGTTACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCCACAAAGGATGCA 309977 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | | || || ||||| ||||||||||| || | Sbjct 309978 GGCCGCATTGCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCAACAGCAGCTGCTTTG 310037 Query 474857 GCTTATGG 474864 ||||||| Sbjct 310038 TCTTATGG 310045 >seq84 Length=349560 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || || || || || || || ||||| || || ||||| Sbjct 21978 ACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGT 21919 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| || || || | || || ||||| || || || Sbjct 21918 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 21859 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| || || | | | | || | ||| Sbjct 21858 CTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCT-CAA 21800 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || |||||||| ||||||||||| || || Sbjct 21799 GGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTG 21760 >seq238 Length=227787 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | | ||| || || ||||| |||||||| || ||||| || Sbjct 50301 TTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGC 50360 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| || || || |||||||| || |||||| || || ||||| || ||| Sbjct 50361 TGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCA 50420 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | ||| | | || || || |||||||||||||| || ||||| || Sbjct 50421 GATGACTCAACCTCCAAAG-TGATGGTCTTGCCGGTGAGAGTCTTGACAAAAATCTG 50476 >seq1709 Length=73423 Score = 89.7 bits (98), Expect = 3e-12 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | |||||| ||| | |||| || || |||||||||||| | |||||||| Sbjct 8710 GCAATACTCCATGGTACACCTAACTCAT-CAATGTTAATATTTGGATCTGGGGTGATAAC 8652 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 ||| || | || | ||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 8651 TGTGCGGGCTGAGAAATCAACACGCTTGCCCATCAAGTTCCCTCTAATACGGCCTTCTTT 8592 Query 321908 T 321908 | Sbjct 8591 T 8591 >seq1689 Length=72926 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||| ||||| ||| || || | ||| |||||||| | || | Sbjct 2117 AGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTGCGC 2176 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || |||||||| |||||||| || || || || || || || || || || ||| Sbjct 2177 CCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCC 2236 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 ||||| || |||||| || ||| || || || || | | | | || | |||| || Sbjct 2237 TTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACCT-CAAGAGT 2295 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || ||||||||||| || || || || Sbjct 2296 AATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTG 2331 >seq22 Length=583761 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| || || || ||||| || || | || || || || |||| Sbjct 190633 ATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 190574 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | ||||| || ||||| ||||| || || || Sbjct 190573 CTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATCAATGAGCCAACTGCTGCTGCTA 190514 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||||| || ||||| Sbjct 190513 TTGCTTATGGTCTCGACAAGAA 190492 >seq4465 Length=15934 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || || ||||| ||||| | || || || || |||||||| ||| Sbjct 6629 ACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCGGGTGTGATT 6688 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| ||||| | ||||| || ||||| || || || || || |||| |||||| Sbjct 6689 GCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTATTGCCTATGGT 6748 Query 474866 CTTGATAAGAA 474876 ||||| ||||| Sbjct 6749 CTTGACAAGAA 6759 >seq2252 Length=53314 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| |||||||| ||||| || ||||||||||||| ||||| |||||| | Sbjct 37765 CAAG-TGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCCA 37823 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||| ||||||||||| || | ||| || || || ||||| || |||||||| |||| Sbjct 37824 ATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAA 37883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267688997631344