Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq9 235 6e-57 seq3095 228 9e-55 seq2645 203 4e-47 seq1688 147 2e-30 seq748 131 2e-25 seq1469 87.8 2e-12 seq3775 82.4 8e-11 >seq9 Length=772998 Score = 235 bits (260), Expect = 6e-57 Identities = 312/434 (72%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 161002 GACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATC 161061 || || || || |||| ||| || | |||||| | | ||||||||||| || ||| Sbjct 516010 GATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 515951 Query 161062 TCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAA 161121 |||||||| | || ||| ||| | || |||| || ||||| || |||| Sbjct 515950 TCTGGTGC-------CATTTTTCCAACTCGAT-----TGCATTTTTACCCAATTCAGGAA 515903 Query 161122 GCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCAC 161181 || ||| ||| || |||||| | ||||| |||||||||| | || |||| | ||| Sbjct 515902 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 515843 Query 161182 TTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGA 161241 ||| | |||| | | ||| ||||||||||||||||||||| || | ||||||| Sbjct 515842 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGT 515783 Query 161242 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 161301 |||| |||||||||| || ||| | || |||||||| | || || | ||| || ||| Sbjct 515782 ATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTC 515723 Query 161302 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGT 161361 || | || ||| | |||||||| ||||||||||| |||||| | || |||| |||| Sbjct 515722 TTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGT 515663 Query 161362 ACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCAT 161421 || ||||||| ||| |||| ||| | | |||||||||||| || ||||| || || || Sbjct 515662 ACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCAC 515603 Query 161422 ATGCTCGGCGTAGC 161435 ||| | || ||||| Sbjct 515602 ATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 228 bits (252), Expect = 9e-55 Identities = 337/474 (71%), Gaps = 15/474 (3%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || |||||||| ||||| ||||| | || |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || || ||| | | ||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || |||||||| || || ||||||| | | ||||||||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 161055 CATCAT-----CTCTGGTGCTGTTATCCCTTC----TTCTAACGCTATCGGTCTGCACTT 161105 || || ||||||||| |||| ||| | |||| || ||||| ||||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 ||||| |||||||| ||| | | || || ||| | ||||| || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 || |||| | |||||| | |||| | | ||| |||||||||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGC 161285 | || ||||||||| ||||||||||||||| || ||||| || |||||||| || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 161286 AGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 161339 || | ||| || ||| || | | ||| | |||||||| ||| |||||||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 Score = 107 bits (118), Expect = 2e-18 Identities = 125/167 (75%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||| | || ||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGG----GGTTGGCTTACTGGGACTAC 162232 || | || ||||| ||||||| | ||| | ||| |||||| |||| |||||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 162233 TTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCT-ATCTT 162278 ||| || || ||||||||| || ||| | || ||||||| ||||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21180 >seq2645 Length=47068 Score = 203 bits (224), Expect = 4e-47 Identities = 282/391 (72%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || || || |||||| | || |||||||| || || ||||| | || ||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGT 160985 || || ||||||| || ||| | | | || | ||| || || || |||||| | Sbjct 45742 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 45684 Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 | || || || || || || || || |||||||| || || ||||||| || | || Sbjct 45683 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 45625 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 ||||||||| || ||||||||||| |||| ||| ||||| | ||||| |||| || Sbjct 45624 TGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 45565 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 ||||| || |||||||| ||| | || |||||| | ||||| |||||||||| | Sbjct 45564 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 45505 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 || |||| | || ||| | |||| | | ||| |||||||||||||||||||| Sbjct 45504 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 45445 Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATT 161256 | || ||||||||| ||||||||||||||| Sbjct 45444 TAGTTTCCGTCTGGGTATGCGTCCTTGGATT 45414 Score = 199 bits (220), Expect = 4e-46 Identities = 281/391 (72%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || || || |||||| | || |||||||| || || ||||| | || ||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGT 160985 || || ||||||| || ||| | | | || | ||| || || || |||||| | Sbjct 1083 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 1141 Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 | || || || || || || || || |||||||| || || ||||||| || | || Sbjct 1142 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 1200 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 ||||||||| || |||||||||| |||| ||| ||||| | ||||| |||| || Sbjct 1201 TGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 1260 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 ||||| || |||||||| ||| | || |||||| | ||||| |||||||||| | Sbjct 1261 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 1320 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 || |||| | || ||| | |||| | | ||| |||||||||||||||||||| Sbjct 1321 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1380 Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATT 161256 | || ||||||||| ||||||||||||||| Sbjct 1381 TAGTTTCCGTCTGGGTATGCGTCCTTGGATT 1411 >seq1688 Length=72660 Score = 147 bits (162), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 161584 GGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCAC 161643 || || || ||||| | || |||||||| ||| ||||||||||| || || | ||| Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 161644 TTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 161703 ||||| |||||||||||||| | || |||||||||||||| | || | || || Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 161704 ATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAA 161763 |||||||||||||| ||||||||||| |||||||| ||| | |||||||| || ||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 24695 Query 161764 GTTATCAACACCTGGGCAGA 161783 |||| || || ||||| || Sbjct 24694 CTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 131 bits (144), Expect = 2e-25 Identities = 134/174 (77%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 161317 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG 161376 |||||||| ||| ||| ||| ||| || | || ||||||||||| ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 161377 CTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA 161436 |||| ||||| ||| |||||||||| || | ||| || || || || | || ||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 161437 GGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCT 161490 ||||| || |||||||| || |||||||| ||||| |||| |||| |||||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCT 126549 >seq1469 Length=84583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| ||||||| ||| Sbjct 84435 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACAGGTTCAAAT 84494 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 84495 CCTGTCATCCCTACCTAT 84512 >seq3775 Length=24633 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 15482 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCCAAT 15423 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 15422 CCTGTCATCCCTACCTAT 15405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547668954312480