Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3095 223 1e-53 seq9 215 2e-51 seq2645 176 1e-39 seq748 107 6e-19 seq1688 84.2 7e-12 >seq3095 Length=35243 Score = 223 bits (246), Expect = 1e-53 Identities = 335/470 (71%), Gaps = 17/470 (4%) Strand=Plus/Minus Query 18352 TACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGC 18409 || ||||||| ||||| ||||| |||| ||| | || | ||||| || | || || |||| Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAA-ACAGCAGTAG-CAGC 20211 Query 18410 TGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAG 18469 ||| || || || ||||| |||||| |||||| || |||||||| || | ||||||| Sbjct 20210 TGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAG 20151 Query 18470 TTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTG 18529 |||||| | || ||||| ||| || | || | | ||||| | ||||| || | Sbjct 20150 TTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTC 20091 Query 18530 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 18589 ||| || || || || ||||||||||| || | | |||||||||||| ||||| || Sbjct 20090 ATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAA 20035 Query 18590 GTGAAGACCGATTGCGTTAGATGACGGGACG----ATTGCCCC-----TGATATGATGTT 18640 ||| | ||||| || ||| | || | | || || || | |||| || || Sbjct 20034 GTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATT 19975 Query 18641 GTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGG 18700 ||||||||| ||||| | || || |||||||||||||||||||| || || || ||||| Sbjct 19974 GTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 19915 Query 18701 AGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAG 18760 ||||| | || || || | |||| | | || |||||| || | | ||||||||| | Sbjct 19914 GGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 19855 Query 18761 TACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || || ||||| || | ||| || ||||| | || || || | ||||| Sbjct 19854 AACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 19805 >seq9 Length=772998 Score = 215 bits (238), Expect = 2e-51 Identities = 312/436 (72%), Gaps = 16/436 (4%) Strand=Plus/Plus Query 18258 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAAC 18317 || ||||| | ||| || || |||||||||||||| ||||| || | | |||||| | | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 18318 ATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 18377 || || ||||||||||| || || | ||||||||||||||||||||| ||||| ||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 18378 AAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACAC 18435 | ||| |||| | ||||| || | || | ||||||| || || || |||| |||||| Sbjct 515709 ATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGAAACAGGAGCTGAATTTGCAACAG 515766 Query 18436 AAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTG 18495 |||||| || ||||||| || | || |||||||||| | || ||||| ||| | Sbjct 515767 CAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAG 515826 Query 18496 CGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACT 18555 | | || | | ||||| | ||||| || | ||| || || || || |||||||| | Sbjct 515827 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 515886 Query 18556 CGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACG 18615 | || || | |||||||||| |||||||| || || | || | ||| | Sbjct 515887 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------G 515934 Query 18616 GGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCAC 18675 | | || || || || || || ||||||||||| ||||| | || | | ||||||| Sbjct 515935 GAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCAT 515994 Query 18676 GAATACCATCTATGTC 18691 |||||||||| || || Sbjct 515995 GAATACCATCAATATC 516010 >seq2645 Length=47068 Score = 176 bits (194), Expect = 1e-39 Identities = 264/374 (71%), Gaps = 1/374 (0%) Strand=Plus/Plus Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| || |||||||| || | ||||||||||||| | || ||||| ||| || Sbjct 45414 AATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 45473 Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556 | || | | || || | ||||| || | ||| || || || || |||||||| || Sbjct 45474 TACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 45533 Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 18616 || | | |||||||||||| |||||||| || || | ||||| | ||| | || Sbjct 45534 ATCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGG 45593 Query 18617 GACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACG 18676 | || || || || || || ||||||||||| |||| | || || ||||||||||| Sbjct 45594 AATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACG 45653 Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736 ||||||||| || || || ||||| || || | || || || | |||| | | || || Sbjct 45654 AATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGT 45712 Query 18737 GGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGT 18796 ||| || | | ||||||||| | ||||||||||| || | ||| || || || | || Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 18797 ACTCGTAACCCAGT 18810 || || | ||||| Sbjct 45773 GCTAGTTATCCAGT 45786 Score = 170 bits (188), Expect = 6e-38 Identities = 263/374 (70%), Gaps = 1/374 (0%) Strand=Plus/Minus Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| || |||||||| || | ||||||||||||| | || ||||| ||| || Sbjct 1411 AATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 1352 Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556 | || | | || || | ||||| || | ||| || || || || |||||||| || Sbjct 1351 TACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 1292 Query 18557 GTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGG 18616 || | | |||||||||||| |||||||| || || | ||||| | ||| | || Sbjct 1291 ATCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGG 1232 Query 18617 GACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACG 18676 | || || || || | || ||||||||||| |||| | || || ||||||||||| Sbjct 1231 AATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACG 1172 Query 18677 AATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGC 18736 ||||||||| || || || ||||| || || | || || || | |||| | | || || Sbjct 1171 AATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGT 1113 Query 18737 GGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGT 18796 ||| || | | ||||||||| | ||||||||||| || | ||| || || || | || Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 18797 ACTCGTAACCCAGT 18810 || || | ||||| Sbjct 1052 GCTAGTTATCCAGT 1039 >seq748 Length=127770 Score = 107 bits (118), Expect = 6e-19 Identities = 123/164 (75%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 126568 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 126626 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||| ||||||| ||||| | || |||||||| | ||| || ||||||||||| || Sbjct 126627 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 126686 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA 18385 || | || |||||||| ||| ||||| ||||| ||| ||| || Sbjct 126687 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTA 126730 >seq1688 Length=72660 Score = 84.2 bits (92), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| || || || |||||||| || || | || || Sbjct 24717 GATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTG 24776 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | | || |||||||||||||||||| |||| | | ||||| Sbjct 24777 AACCAGATCCCTATTACAGGCCAAGCAGCCAAGAAG---TGTAAAGAACGAGAGTTGTTG 24833 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCAT 18111 || |||||||| |||||||| | || ||||| || |||| Sbjct 24834 AAACTAGCATATTGGAAGATTAATCGACCAAAATAACCAT 24873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151297864958232