Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3095 215 7e-51 seq9 192 7e-44 seq2645 161 1e-34 seq748 116 5e-21 >seq3095 Length=35243 Score = 215 bits (238), Expect = 7e-51 Identities = 353/503 (70%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 103685 AAAGGCA-TAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGA 103743 |||||| ||||||| || || |||||||||| |||| | |||||| || || | Sbjct 20276 AAAGGCTGTAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGT 20217 Query 103744 CGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTA 103803 ||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| | Sbjct 20216 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAA 20157 Query 103804 GGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTAC 103863 | |||||||||||| |||||||| | | |||| | |||||| | || | Sbjct 20156 ACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 20097 Query 103864 AAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGG 103923 || | ||||||| || || || | ||||||||||| |||||| |||||||| || Sbjct 20096 TAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GG 20041 Query 103924 ATAGAAGTGAAGACCAATTGC----GTTGGAGGAGGGAACAACTGCACCAGAG-----AT 103974 || ||||| | || || || | | ||| |||| || ||||||||| || Sbjct 20040 GTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATAT 19981 Query 103975 GATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGAC 104034 || ||||| || || | | ||||||| || || |||||||| || || ||||| || Sbjct 19980 AATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTAC 19921 Query 104035 GGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGA 104093 ||||| || || | |||||| | || || |||| ||||| | ||| | || |||| Sbjct 19920 TGGAGGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGA 19862 Query 104094 TCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGC 104153 |||||| ||||||||||| || | || |||||||| | || || | ||| | || Sbjct 19861 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGC 19802 Query 104154 AGAAGTTATCCCACGAGGATTGT 104176 ||||| | ||||| ||| |||| Sbjct 19801 AGAAGCGACCCCAC-AGGCTTGT 19780 >seq9 Length=772998 Score = 192 bits (212), Expect = 7e-44 Identities = 303/435 (70%), Gaps = 12/435 (3%) Strand=Plus/Plus Query 103597 AGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAG 103656 ||| || || | |||||| || || ||||| || ||||| || || | | ||| || | Sbjct 515588 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 515647 Query 103657 CATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACC 103716 ||| ||||||| || || | || || ||||||||| |||| ||||| |||||||| Sbjct 515648 CATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 515707 Query 103717 AAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACA 103776 || ||||| | |||||| || || | ||||| | ||||||||| || | ||| ||| Sbjct 515708 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 515767 Query 103777 GATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATA 103836 ||||| || |||| ||||||| | | | |||||||||||| |||||||| | Sbjct 515768 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 515827 Query 103837 GATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTC 103896 | |||| | |||||| | || | || | |||||||||| || || | ||| || Sbjct 515828 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 515887 Query 103897 ATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGG 103956 |||||||||||| |||||| ||| || || || || |||| | ||| || Sbjct 515888 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GG 515935 Query 103957 AACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACG 104016 || || ||||||||||| || ||||| || || | | |||||| | || ||| | Sbjct 515936 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATG 515995 Query 104017 AATGCCGTCGATATC 104031 ||| || || ||||| Sbjct 515996 AATACCATCAATATC 516010 >seq2645 Length=47068 Score = 161 bits (178), Expect = 1e-34 Identities = 279/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| || ||||| ||||||||| | | |||||||||||| |||||||| | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 103838 ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCA 103897 | |||| | ||| || | || | || | |||||||||| || || | ||| ||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 103898 TCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGA 103957 |||| ||||| ||||||||||| || || || || | || || | || | ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 103958 ACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGA 104017 | || ||||||||||| || ||||| || || | || ||||||| || || |||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 104018 ATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGC 104076 || || || ||||| || ||||| ||||| | ||| || | || || |||| |||| Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 45712 Query 104077 CGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT 104136 | ||| | || |||||||||| || || ||||| || | || ||||| || | || Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 104137 CGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || | ||| | |||||||| | ||||| ||| |||| Sbjct 45773 GCTAGTTATCCAGTTGCAGAAGTGACCCCAC-AGGCTTGT 45811 Score = 158 bits (174), Expect = 2e-33 Identities = 278/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| || ||||| ||||||||| | | |||||||||||| |||||||| | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 103838 ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCA 103897 | |||| | ||| || | || | || | |||||||||| || || | ||| ||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 103898 TCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGA 103957 |||| ||||| ||||||||||| || || || || | || || | || | ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 103958 ACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGA 104017 | || |||||||||| || ||||| || || | || ||||||| || || |||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 104018 ATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGC 104076 || || || ||||| || ||||| ||||| | ||| || | || || |||| |||| Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 1113 Query 104077 CGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT 104136 | ||| | || |||||||||| || || ||||| || | || ||||| || | || Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 104137 CGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || | ||| | |||||||| | ||||| ||| |||| Sbjct 1052 GCTAGTTATCCAGTTGCAGAAGTGACCCCAC-AGGCTTGT 1014 >seq748 Length=127770 Score = 116 bits (128), Expect = 5e-21 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 103510 AGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAG 103568 ||||||||||||||| ||||| | || | | | | || || || | |||| ||||||| Sbjct 126516 AGATTCAGTTTCAGTGGTCTCCCTGAGCAAACTA-GAGGTTACCAAGGAACTATGCATAG 126574 Query 103569 CACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGA 103628 ||||||| || ||||| ||||| || ||||| || || | ||||| || || ||| | | Sbjct 126575 CACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAA 126633 Query 103629 GAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAG 103688 | ||||| || | || ||||| || | ||| ||||||| || || || || || |||| Sbjct 126634 GGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAG 126693 Query 103689 GCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAG 103726 |||| ||| || || ||||||||| |||||| Sbjct 126694 CCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAG 126731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633423102582240