Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq9 185 3e-42 seq3095 183 9e-42 seq2645 143 8e-30 seq1688 109 2e-19 >seq9 Length=772998 Score = 185 bits (204), Expect = 3e-42 Identities = 242/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| | ||||||||| ||||||||||| || |||||||| ||| ||| || | | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 || ||||||| || || | || || || |||||| ||||||| ||| || || ||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || |||| | ||| |||||||| ||||| | |||||||| || | |||||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || ||| || || | | ||||||||||||| || ||||| ||| | Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | |||||| | || | || | | ||||| || ||||| | ||||||| Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 ||||| | ||||||||| ||||||||| || || Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG 515923 >seq3095 Length=35243 Score = 183 bits (202), Expect = 9e-42 Identities = 313/449 (70%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 21988 TAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGG 22047 |||||||||||||| || || |||| || | || | ||| |||||||| ||||| | Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 22048 CGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTT 22107 | |||||||| || || |||||| ||||| || | ||| || || || | ||||||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 22108 CCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGA 22167 ||||||| || ||||| ||| | || |||| | |||||| | || | || | Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 22168 ATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGT 22227 | |||||||| ||||| | ||| ||||||| | ||||||||||| ||||| |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGT 20033 Query 22228 GTAGTCCGAT---GGCATTACT-GCTCGGAACGACGGCTCC-----TGATATGATGTTGT 22278 | | |||||| ||| | | | | |||| | ||| || | |||| || |||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 22279 TACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTG 22338 | ||||| | | || |||| || || || || || ||||| || || || || || | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 22339 CGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGG 22397 | | | || ||||||||||| || || |||| ||| ||| | || ||||| | Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAA 19854 Query 22398 ACTCCGAACCATCCTACATAAAGACGGTT 22426 || ||||||||||| | ||||||||||| Sbjct 19853 ACACCGAACCATCCGATGTAAAGACGGTT 19825 >seq2645 Length=47068 Score = 143 bits (158), Expect = 8e-30 Identities = 248/356 (70%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | ||| || || || | |||||||||||||| || ||||| ||| | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | ||| || | || | || | | ||||| || ||||| | ||||||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGA 22253 |||| || |||||||||||||||||||| || || | |||||| | | | ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 22254 ACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGG 22313 | | ||| || || || || ||||| ||||| | || || |||| || || || || Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 22314 ATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTA 22370 || ||||| || || || || || || | | |||||||||||||| | ||||||| Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGT- 45712 Query 22371 GCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | ||| ||| | || ||||| | || || |||||||| | |||||||| || Sbjct 45713 -GGTCAATAAGGTA-GGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATT 45766 Score = 140 bits (154), Expect = 9e-29 Identities = 247/356 (69%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | ||| || || || | |||||||||||||| || ||||| ||| | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | ||| || | || | || | | ||||| || ||||| | ||||||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGA 22253 |||| || |||||||||||||||||||| || || | |||||| | | | ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 22254 ACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGG 22313 | | ||| || || | || ||||| ||||| | || || |||| || || || || Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 22314 ATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTA 22370 || ||||| || || || || || || | | |||||||||||||| | ||||||| Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGT- 1113 Query 22371 GCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | ||| ||| | || ||||| | || || |||||||| | |||||||| || Sbjct 1112 -GGTCAATAAGGTA-GGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATT 1059 >seq1688 Length=72660 Score = 109 bits (120), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 21587 AGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGC 21646 ||||||||| || ||||||||||| | |||||| ||||| ||| | || | |||| Sbjct 24716 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 24775 Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706 ||||| || |||| |||||||| ||||| ||||| || | | ||| || || || Sbjct 24776 GAACCAGATCCCTATTACAGGCCAAGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTT 24832 Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCC 21745 || ||||||||||||||||| | ||||||||||| || Sbjct 24833 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACC 24871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146188158477840