Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq209 100 1e-16 seq1871 95.1 6e-15 >seq209 Length=235896 Score = 100 bits (110), Expect = 1e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 50822 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 50881 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 50882 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 50941 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||||| || ||||||||| ||||| |||| || | ||||| || Sbjct 50942 GAATATTGTGAGCTGAAACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 51001 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 51002 TCAGGGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 51041 >seq1871 Length=66875 Score = 95.1 bits (104), Expect = 6e-15 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 39510 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 39569 Query 26124 ACATTGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 |||| ||||| ||||| ||| ||| ||| ||||| | |||| | || || | | Sbjct 39570 ACATAGGAAC-AATCCCGTTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCT 39628 Query 26183 CTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 | ||||| |||| | || ||| ||||| ||||| |||| || | ||||| || Sbjct 39629 CGAATATTGTGAACTGAAACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCC 39688 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 39689 TTCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 39729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253004756905100