Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9 226 3e-54 seq3095 159 4e-34 seq2645 141 1e-28 seq748 107 2e-18 seq1688 104 3e-17 seq2612 89.7 6e-13 >seq9 Length=772998 Score = 226 bits (250), Expect = 3e-54 Identities = 292/404 (72%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAAC 124531 ||||| ||| |||||| || |||||||| || ||||| |||||| | | ||| || | | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCA 124591 ||||||||||||||||| |||| || | ||||||||||||||||| || |||||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 124592 AATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAG 124651 | ||||| | ||||| ||||| ||||| || || || ||||||| |||||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 124652 ATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAA 124711 ||||||||| |||| || | | | | |||||||||| | ||||| || | Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 124712 ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCA 124771 | ||||| | |||||| | || | | || ||||||||||||||| || ||||||||| Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 124772 TCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGA 124831 |||| || ||| |||||| |||||||| || || | | ||| | |||| Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCAAT-CGA-----------GTTGGA 515936 Query 124832 ACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 | || ||||||||||| || ||||| ||||| | |||||||| Sbjct 515937 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 515980 >seq3095 Length=35243 Score = 159 bits (176), Expect = 4e-34 Identities = 325/477 (68%), Gaps = 17/477 (4%) Strand=Plus/Minus Query 124566 TACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAG 124625 || ||||||| || || ||||||| |||| | ||||| ||||| ||||| | Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 124626 ATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTT 124685 || || |||||||| |||||| |||||||||||||| || | | | | |||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 124686 CCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGAT 124745 |||||| | ||||| || | | ||||| | |||||| | || | | || || Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 124746 AAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGT 124805 ||||||| ||||| || ||||| |||||||||| ||| |||||||| ||||| |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGT 20033 Query 124806 GTAGTCCGATAGC----GTTTGATGATGGAACAACTGCACCAGAG-----ATGATGTTGT 124856 | | |||||| || | | | |||| || ||||||||| || || |||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 124857 TACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTG 124916 | ||||| | |||||||| | || || || | || || || ||||| || ||||| | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 124917 CTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGA 124975 | || || || || | || || ||| | | ||| || | |||| || ||||| | | Sbjct 19912 CAGCGATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 19854 Query 124976 ACACCAAACCAACCAACATAAATTCTGTTGTTTGTTGAT-GTTACCCACTCACAGAA 125031 ||||| ||||| || | |||| | ||| || | || | |||| ||| | ||||| Sbjct 19853 ACACCGAACCATCCGATGTAAAGACGGTT-TTCGGTGCTAGTTATCCAGTTGCAGAA 19798 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCA----CCG 123811 |||| ||||| |||||||| || || || || ||||| ||| ||||||||| || Sbjct 21196 CAAT-CCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCAACCCCCT 21254 Query 123812 ATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGA 123871 | | | ||| |||||||| | || || || || ||||||||||| || || ||||| Sbjct 21255 AAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAAAAACGAAACGG 21314 Query 123872 TCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || || |||||||||||| | || |||||| Sbjct 21315 TCCCTTCGTAACCAGTCGTCCATAATATCAAA 21346 >seq2645 Length=47068 Score = 141 bits (156), Expect = 1e-28 Identities = 242/347 (70%), Gaps = 3/347 (1%) Strand=Plus/Plus Query 124652 ATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAA 124711 |||||||||||||| || | | | | |||||||||| | ||||| || | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 124712 ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCA 124771 | ||||| | ||| || | || | | || ||||||||||||||| || ||||||||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 124772 TCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGA 124831 |||| | ||| |||||||| |||||||| || || | |||||| | || | ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 124832 ACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTG 124891 | || ||||||||||| || ||||| ||||| | | |||||| | || || || | Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 124892 ATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGC 124950 || || || ||||| || ||||| ||||| || || || | || || ||| | | || Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 45712 Query 124951 TGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 || | |||| || ||||| | ||| |||||||| || | |||| Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAA 45759 Score = 138 bits (152), Expect = 1e-27 Identities = 241/347 (69%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 124652 ATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAA 124711 |||||||||||||| || | | | | |||||||||| | ||||| || | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 124712 ATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCA 124771 | ||||| | ||| || | || | | || ||||||||||||||| || ||||||||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 124772 TCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGA 124831 |||| | ||| |||||||| |||||||| || || | |||||| | || | ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 124832 ACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTG 124891 | || |||||||||| || ||||| ||||| | | |||||| | || || || | Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 124892 ATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGC 124950 || || || ||||| || ||||| ||||| || || || | || || ||| | | || Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 1113 Query 124951 TGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 || | |||| || ||||| | ||| |||||||| || | |||| Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAA 1066 >seq748 Length=127770 Score = 107 bits (118), Expect = 2e-18 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 124422 TAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTG 124481 || |||| |||| |||||| || ||||| || || ||||| | || ||||| ||| Sbjct 126555 TACCAAG-GAACTATGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTA 126612 Query 124482 CCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGA 124541 ||||| || |||||| | || ||||| |||| ||| ||||| || | ||||||||||| Sbjct 126613 AGATGTGAAATGGATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGA 126672 Query 124542 AAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTA 124599 ||||||| ||||| || | | |||||||| ||| || || |||||| ||||| Sbjct 126673 AAGTACCAGAGATTCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTA 126730 >seq1688 Length=72660 Score = 104 bits (114), Expect = 3e-17 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || |||||||| || ||||||||||| | |||||||||||| || | ||||| Sbjct 24707 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 24766 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | | || ||||| || | || |||||||| | | | Sbjct 24767 TAAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGC---CAAGAAGTGTAAAGAACG 24823 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACC 124323 ||||||||||| |||||| |||||||| | |||||||| ||||| Sbjct 24824 AGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACC 24871 >seq2612 Length=46990 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | ||||||||| || || ||||||||||| || |||||||| || Sbjct 6494 ACACCAATAGGGCCCATGCCAGGACCACCTCCGCCATGTGGAATGCAAAATGTCTTGTGC 6553 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || |||||||| ||| | || ||| ||| || || |||||| Sbjct 6554 AGGTTAAGATGGCAAACATCTGCTCCAATGAAACCTGGGCTTGTTAACCCAACCTGT 6610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578915690078560