Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq9 248 1e-60 seq3095 210 3e-49 seq2645 187 3e-42 seq1688 136 5e-27 seq748 134 2e-26 >seq9 Length=772998 Score = 248 bits (274), Expect = 1e-60 Identities = 338/469 (72%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 27156 AGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAG 27215 ||| ||||| | |||||| || || ||||||||||| ||||| ||| ||| |||||||| Sbjct 515588 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 515647 Query 27216 CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 ||| |||| ||||||||| |||| || | ||||||| |||| |||||| |||||||| Sbjct 515648 CATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 515707 Query 27276 GAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACA 27335 | ||| || | | ||| || ||| | ||||| | || ||||| |||| ||| ||| Sbjct 515708 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 515767 Query 27336 GATCCATGGACGCATACCTAAAC-GATATGAGAGTTCCCACTCACGTCCCATATAAGCAT 27394 ||||| ||| ||||||| | || || || | |||||||||||||| ||||||||| | Sbjct 515768 AATCCAAGGATGCATACCCAGACAGAAATTA-AGTTCCCACTCACGACCCATATAACAAG 515826 Query 27395 AGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACT 27454 | || | | |||||| | || | || | |||||||||| || || ||||| | Sbjct 515827 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATT 515886 Query 27455 CATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTG 27514 |||| || ||||| |||||| |||||||| || || | | || | ||| Sbjct 515887 CATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCA-ATCG-----------AGTTG 515934 Query 27515 GGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCAC 27574 | | || |||||||| || || ||||| ||||| | | |||||| || || ||| Sbjct 515935 GAAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCAT 515994 Query 27575 GAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA 27623 ||||||| |||||||| | | | ||||||||||| |||| ||| || Sbjct 515995 GAATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 516041 >seq3095 Length=35243 Score = 210 bits (232), Expect = 3e-49 Identities = 318/449 (71%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 27251 TAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAG 27310 ||||||| || ||| |||||||| | ||| | | | ||| || ||| | ||||| | Sbjct 20268 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 20209 Query 27311 CGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTT 27370 | || ||||| |||||||| ||| ||||| ||||||||||| | ||| | |||| Sbjct 20208 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTT 20149 Query 27371 CCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGA 27430 |||||||||| ||||||||| | | || | | |||||| | || | || | Sbjct 20148 CCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 20089 Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 ||||||| || || || ||||||||||| | ||||| ||||||||| |||| |||| Sbjct 20088 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAGT 20033 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACT----GCACCAGAAATGATGT-----TGT 27541 | | ||||| || ||| | || | | | |||||||| || || | ||| Sbjct 20032 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 19973 Query 27542 TGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTG 27601 | ||||| | | ||||||| ||| || ||||||||||| |||||||| || || || | Sbjct 19972 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 19913 Query 27602 CTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGT 27660 | |||||||| |||| ||| || |||| |||||| | || | || |||||||||| Sbjct 19912 CAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAA 19854 Query 27661 ACACCGAACCAACCAACATACAAACGGTT 27689 ||||||||||| || | || | |||||| Sbjct 19853 ACACCGAACCATCCGATGTAAAGACGGTT 19825 >seq2645 Length=47068 Score = 187 bits (206), Expect = 3e-42 Identities = 247/339 (73%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 27337 ATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG 27396 ||||| ||||||||||| | ||| | |||||||||||||| ||||||||| | Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 27397 ATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCA 27456 | || | | ||| || | || | || | |||||||||| || || ||||| ||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 27457 TCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGG 27516 || | |||||| |||||||| |||||||| || || | ||||| | ||| | || Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 27517 ACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGA 27576 | || |||||||| || || ||||| ||||| | || ||||||| ||| || |||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 27577 ATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGC 27635 ||||| |||||||| || || || ||||||||||| |||| ||| || |||| ||||| Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 45712 Query 27636 TGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACC 27674 | || | || |||||||||| || || ||||| || Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCC 45751 Score = 181 bits (200), Expect = 1e-40 Identities = 246/339 (73%), Gaps = 3/339 (1%) Strand=Plus/Minus Query 27337 ATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG 27396 ||||| ||||||||||| | ||| | |||||||||||||| ||||||||| | Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 27397 ATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCA 27456 | || | | ||| || | || | || | |||||||||| || || ||||| ||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 27457 TCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGG 27516 || | |||||| |||||||| |||||||| || || | ||||| | ||| | || Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 27517 ACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGA 27576 | || |||||||| | || ||||| ||||| | || ||||||| ||| || |||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 27577 ATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGC 27635 ||||| |||||||| || || || ||||||||||| |||| ||| || |||| ||||| Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGA-AGTTGT 1113 Query 27636 TGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACC 27674 | || | || |||||||||| || || ||||| || Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCC 1074 >seq1688 Length=72660 Score = 136 bits (150), Expect = 5e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 26809 TCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAA 26868 || |||||||| || | | ||||| || ||||| ||||| || ||||| |||||| Sbjct 24675 TCAGCCCAAGTATTCATAAGGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAA 24734 Query 26869 CCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACG 26928 || || || ||||| ||||| || | ||| | || ||||||||||| || | || Sbjct 24735 CCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTATTACA 24794 Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988 ||||| ||||| |||||||| || ||||| ||||||||||| ||||||||||||| Sbjct 24795 GGCCAAGCAGC---CAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 24851 Query 26989 ATCAAACGACCGAAGTAGCCATGT-GCTGCGAC 27020 || || ||||| || || |||| | ||||||| Sbjct 24852 ATTAATCGACCAAAATAACCATTTCACTGCGAC 24884 >seq748 Length=127770 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 27070 GACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCA 27129 || ||||||||||| ||||| | || | ||| || |||| | ||||||||| Sbjct 126517 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 126576 Query 27130 GAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGG 27189 ||| || || || |||||||| ||||| ||||| | ||||| || || ||| ||||| Sbjct 126577 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 126635 Query 27190 ATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGC 27249 || ||||| | |||||||||||||| ||| |||| |||||||||||||| || | || | Sbjct 126636 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 126695 Query 27250 ATAGCATCGGAGAAAGAACCTTGACC 27275 ||| ||| || ||| |||||||| Sbjct 126696 ATACCATTAGAAAAACTTCCTTGACC 126721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665399334124960