Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2074 118 1e-21 seq124 114 2e-20 seq1824 113 5e-20 seq3589 111 2e-19 seq1933 111 2e-19 seq2059 105 8e-18 seq58 87.8 2e-12 seq209 84.2 3e-11 >seq2074 Length=58204 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| ||||| ||| | ||||| || || || ||||| ||||||||||| || || || Sbjct 21970 CTTCGCAGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTT 21911 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||||||||| |||||| || || Sbjct 21910 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGA 21851 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 21850 GCTCATCTCCCGCGACGAGGGCCTGCAC 21823 >seq124 Length=296087 Score = 114 bits (126), Expect = 2e-20 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| ||| ||| || || || || || ||| Sbjct 172874 GGAGCCAAGATCCCCAAGGGATGCCTCCTCGTGGGCCCGCCTGGGACAGGTAAAACTCTC 172815 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| ||||| | | Sbjct 172814 CTTGCGCGTGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCTGCCTCCGAG 172755 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | ||| Sbjct 172754 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCATCCAGGGTCAGGGACCTCTTCGAGAAGGCC 172695 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | || || || |||||||||||||||||||| || || || || | ||| || Sbjct 172694 AAGGCCAAGGCGCCGTGCATTGTCTTCATTGATGAGATCGACGCCGTTGGGAGGCAGCGT 172635 Query 175515 -----CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | ||| |||||||| || || || ||||| || || Sbjct 172634 GGTGCCGGCCTTGGTGGT------GGAAACGACGAGAGGGAGCAGACCATTAACCAGCTG 172581 Query 175570 CTCACCGAGATGGATGGCTTTG 175591 || || |||||||| ||||||| Sbjct 172580 CTGACGGAGATGGACGGCTTTG 172559 >seq1824 Length=71116 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| |||||||| || || || || Sbjct 41852 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 41793 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| ||||| || || Sbjct 41792 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 41733 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || |||||||| ||| || |||||| Sbjct 41732 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCC 41693 >seq3589 Length=27756 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| |||||||| || || || || Sbjct 17033 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 16974 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| ||||| || || Sbjct 16973 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 16914 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || ||||| || |||||||| ||| || ||||| Sbjct 16913 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 16875 >seq1933 Length=69095 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| |||| || ||||| ||| | | ||| Sbjct 52645 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCTCGGGTCCGTGATCTGTTTAAGAAGGCC 52704 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| ||||||||||| || | ||| | Sbjct 52705 AAGGAGAATGCCCCTTGCATAGTGTTTGTTGATGAAATTGATGCGGTTGGAAGGCAGAGA 52764 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||| | | |||||| || || || || || | |||||||| | || Sbjct 52765 GGAACTGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACCCTCAATCAACTTTTGACT 52824 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | || || || | ||||| || |||||||| || | Sbjct 52825 GAGATGGATGGTTTTGAGGGAAACACCGGAATAATTGTTATAGCTGCCACTAACCGAGCT 52884 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||||| | ||| || || ||| | || || || ||||| Sbjct 52885 GATATTTTGGATTCTGCTCTACTTAGACCTGGACGCTTTGA 52925 >seq2059 Length=61725 Score = 105 bits (116), Expect = 8e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || ||| |||| || || || || || || || ||| Sbjct 1924 GGAGCCAAGATCCCAAAGGGATGCCTCCTCGTCGGCCCACCTGGGACAGGCAAAACACTC 1983 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| || | || || | || || ||| || ||| | ||| | | Sbjct 1984 CTCGCCCGTGCCGTCTCTGGGGAGGCCGGGGTACCCTTCTTCTCCTGCGCCGCCTCCGAG 2043 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | || Sbjct 2044 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCGTCCAGGGTCAGGGACCTCTTCGAGAAGGCT 2103 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 2104 AAGGCCAAGGCGCCTTGCATTGTCTTCATTGATGAGATTGATGCTGTCGGGAGGCAGCGT 2163 Query 175516 AGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||||| | | | | ||| || ||||| || || || ||||| || || ||||| Sbjct 2164 GGTGCTGG-GCTCGGTGGTGGAAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCAC 2222 Query 175575 CGAGATGGATGGCTTTG 175591 ||| ||||| ||||||| Sbjct 2223 CGAAATGGACGGCTTTG 2239 >seq58 Length=393800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||| ||||| ||||| | || || ||||| ||| | | ||| Sbjct 351881 TTCGTGGAGATGTTTGTCGGTGTTGGTGCATCCCGTGTCCGTGATCTGTTTAAGAAGGCC 351822 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || || || || ||||||| |||||||| || || | ||| | Sbjct 351821 AAGGAGAATGCACCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGAGA 351762 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| ||| | |||||| || || || || || | || || || | Sbjct 351761 GGAACTGGTATCGGT---GGTGGAAATGATGAAAGGGAGCAGACCCTGAACCAGCTTTTG 351705 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 |||||||||||||| ||||| | ||||| || | |||||||| ||||| || || Sbjct 351704 ACCGAGATGGATGGTTTTGAAGGGAACACTGGAATAATTGTTATTGCTGCCACCAACCGA 351645 Query 175633 GTGGATAT 175640 | ||||| Sbjct 351644 GCTGATAT 351637 >seq209 Length=235896 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| |||| || |||||||| |||| || || |||| | || |||| || Sbjct 51375 GGGACTTCGATTATGACTACTTTGGGTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA-- 51318 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | ||| | | | |||| ||||| ||||||| ||| | || || | || || Sbjct 51317 GCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGTTAATGAGAGTTTCAGTGGGGAT 51258 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| |||||||| |||| | | | |||||| | |||||| || | ||| Sbjct 51257 ACACAAGGATGACATTGAATCTGCCATCAAAACATACCATCTGATGTCTCAGCGCTGGTT 51198 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 | || || ||||||| || |||||||||||||| || || || ||| || Sbjct 51197 TACACATGCTTCACCAACGCTTTTCAATGCTGGTACTCCCAGGCCCCAGGTG 51146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596484380032640