Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq9 190 3e-43 seq3095 156 5e-33 seq2645 152 6e-32 seq748 134 2e-26 seq1688 93.3 5e-14 >seq9 Length=772998 Score = 190 bits (210), Expect = 3e-43 Identities = 302/434 (70%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 8314 GCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAAC 8373 ||||| ||| ||| || || ||||||||||| ||||| |||||| | | |||||| | | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 || ||||| || |||||| | || |||| |||||| ||||||||||| || |||||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493 | || || | ||||| || || |||||| || || ||||| || ||| ||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || |||||| | | | | | ||||||| | |||||| ||| || Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | |||||| | | || | || ||| ||||| || || || ||||| ||| Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 || | | ||||||||| ||| || || | ||| |||| | ||||||| | Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAA-----AATGCAATCGAGTTGGAAAA---- 515939 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | ||||||||||| || ||||||||||| | || ||||| || ||| ||| || Sbjct 515940 ---ATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATGA 515996 Query 8734 ATACCGTCGATATC 8747 ||||| || ||||| Sbjct 515997 ATACCATCAATATC 516010 >seq3095 Length=35243 Score = 156 bits (172), Expect = 5e-33 Identities = 318/472 (67%), Gaps = 13/472 (3%) Strand=Plus/Minus Query 8411 CATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATA 8470 ||||||| || || ||||||| || | | ||||| || || |||||| | | Sbjct 20265 CATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAA 20206 Query 8471 CTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCC 8530 | ||||| |||||| ||| ||||| || | |||||| | ||| | | |||| Sbjct 20205 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 20146 Query 8531 ACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATG 8590 ||| | |||||| ||| || | |||| | |||||| | | || | || ||| | Sbjct 20145 ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 20086 Query 8591 GACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTA 8650 |||| || || || ||||||||||| | | ||||||||||| || || ||||| | Sbjct 20085 GACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAGTGCA 20030 Query 8651 ATCCAATAGCGTTGGAAGATGGAACGACA----GCACCAGAGATGATGT-----TGTTTC 8701 |||| || || |||| || | || ||||||||||| || | |||||| Sbjct 20029 ATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGTTTC 19970 Query 8702 CATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAG 8761 |||| | || ||||| | |||||| ||||||||||| || ||||| || || || |||| Sbjct 19969 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAG 19910 Query 8762 CAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTC 8821 | || || || | ||||| || || || | || ||| ||| ||||| | ||| | Sbjct 19909 CGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 19850 Query 8822 CAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | ||||| |||| ||||| | ||| | || || || | ||| | ||| || Sbjct 19849 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19798 >seq2645 Length=47068 Score = 152 bits (168), Expect = 6e-32 Identities = 268/389 (69%), Gaps = 1/389 (0%) Strand=Plus/Plus Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| || Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | ||| || | | || | || ||| ||||| || || || ||||| ||| Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 || |||| |||||||||||||| || || || || ||||| || | |||| ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | | ||||||||||| || ||||||||||| | | ||||| | |||||| |||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 8734 ATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCA 8793 ||||| || ||||| || || || || || || || || | ||||| || || | Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 45713 Query 8794 GCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTA 8853 | || ||| ||| ||||| | ||| |||||||| |||| ||||| | || | || Sbjct 45714 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 45773 Query 8854 CTTGTAACCCACTCGCAAAACTCACTCCA 8882 || || | ||| | ||| || | || ||| Sbjct 45774 CTAGTTATCCAGTTGCAGAAGTGACCCCA 45802 Score = 149 bits (164), Expect = 8e-31 Identities = 267/389 (69%), Gaps = 1/389 (0%) Strand=Plus/Minus Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| || Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | ||| || | | || | || ||| ||||| || || || ||||| ||| Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 || |||| |||||||||||||| || || || || ||||| || | |||| ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | | |||||||||| || ||||||||||| | | ||||| | |||||| |||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 8734 ATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCA 8793 ||||| || ||||| || || || || || || || || | ||||| || || | Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACAGAAGTTGTG 1112 Query 8794 GCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTA 8853 | || ||| ||| ||||| | ||| |||||||| |||| ||||| | || | || Sbjct 1111 GTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGTG 1052 Query 8854 CTTGTAACCCACTCGCAAAACTCACTCCA 8882 || || | ||| | ||| || | || ||| Sbjct 1051 CTAGTTATCCAGTTGCAGAAGTGACCCCA 1023 >seq748 Length=127770 Score = 134 bits (148), Expect = 2e-26 Identities = 150/199 (75%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 |||||| ||||| |||| | | ||| || || || |||| |||||||||||||| || Sbjct 126525 TTCAGTGGTCTCCCTGAGCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGAATAG 126584 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| || || || |||||| |||| ||||| || Sbjct 126585 -GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTG 126643 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 || ||| |||||||| | ||| ||||| || |||||||| || |||| || ||| |||| Sbjct 126644 CTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATT 126703 Query 8415 AGAGAATGAACCCTGACCA 8433 ||| || || |||||| Sbjct 126704 AGAAAAACTTCCTTGACCA 126722 >seq1688 Length=72660 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/171 (74%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || || || || || ||||| |||||||| || | |||||| Sbjct 24707 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 24766 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||||| | | || || || | | ||| | |||| || |||| | Sbjct 24767 TAAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGCCAAGAAGT-GTAAAGAA--CG 24823 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCAT 8167 | |||||| |||| | ||||| ||||||||||||| |||||| || |||| Sbjct 24824 AGAGTTGTTGAAACTA-GCATATTGGAAGATTAATCGACCAAAATAACCAT 24873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615774424056160