Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq3095 221 1e-52 seq9 214 2e-50 seq2645 192 7e-44 seq1688 140 4e-28 seq748 105 8e-18 seq3349 89.7 6e-13 >seq3095 Length=35243 Score = 221 bits (244), Expect = 1e-52 Identities = 337/475 (71%), Gaps = 15/475 (3%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | |||||||| || |||| ||||| ||| | Sbjct 19797 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 19856 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| |||| || || |||| ||||||||||| | Sbjct 19857 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 19915 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||||||| | | ||||| |||| Sbjct 19916 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 19975 Query 165947 ACATCAT-----CTCTGGTGCAGTTGTTCC---CT-CTTCCAACGCAATTGGTCTACACT 165997 | || || ||||||||| || |||| || |||| || || || | |||| Sbjct 19976 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 20035 Query 165998 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCC 166057 | || || |||||||| ||||| |||| || ||| | || || || ||||||| Sbjct 20036 TTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20091 Query 166058 AACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 166117 | || |||| | |||||| | |||| | | || ||||||||||||||||||| Sbjct 20092 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 166118 TGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTG 166177 | || |||||| ||||||||||| ||||| |||||| || ||||| || || || | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 166178 CTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGC 166232 |||| | ||| || ||| | | | ||| | |||||||| ||||| |||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | || |||||| | |||||| ||||| |||||| | || ||||| || Sbjct 21346 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 21287 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCT----TACTGGGACTAC 167129 || | || ||||| ||||||| | ||| | || |||||| | ||| |||||||| Sbjct 21286 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 21227 Query 167130 TTTCGTCACGAGTTGGTATACTCATGGA 167157 ||| || || ||||||||| |||||| Sbjct 21226 TTTTGTAACTTCTTGGTATACCCATGGA 21199 >seq9 Length=772998 Score = 214 bits (236), Expect = 2e-50 Identities = 324/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 165869 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTT 165928 ||||||||||||| ||| || | || || || || || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 165929 CTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTG 165988 || | | ||||| ||||| || ||||||||||| || |||| ||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 515924 Query 165989 GTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTG 166048 || || || || || |||||| ||||| ||||| |||||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 166049 GTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTG 166108 |||||| | || |||| | |||||| | |||| | | || |||||||||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 166109 AGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCAC 166168 |||||||||| || | |||| ||||||| ||| ||||| |||||| | ||||| | Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 166169 CAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTG 166228 | || | ||||| | ||| || ||| | | || ||| | |||||||| |||||||||| Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 166229 ATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGC 166288 ||| ||||| | ||||||| || || ||||||| ||| | || ||| | | |||| Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 166289 ACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 |||| || || |||||||| || || ||| | || || ||| Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq2645 Length=47068 Score = 192 bits (212), Expect = 7e-44 Identities = 274/382 (72%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | || ||||| || |||| |||||||| | Sbjct 45794 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 45735 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | ||||| |||| || || ||||||||||||| || | Sbjct 45734 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 45677 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||||||||| | ||||| |||| Sbjct 45676 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 45617 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || ||||||||||| || |||| |||| | || || | || || || || | Sbjct 45616 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 45557 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || |||||||||| | || ||| Sbjct 45556 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 45497 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | || ||| | |||| | | || |||||||||||||||||||| || || Sbjct 45496 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 166127 GTCTAGGTATGCGTCCATGGAT 166148 |||| ||||||||||| ||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGAT 45415 Score = 187 bits (206), Expect = 3e-42 Identities = 273/382 (71%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | || ||||| || |||| |||||||| | Sbjct 1031 CTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTT 1090 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | ||||| |||| || || ||||||||||||| || | Sbjct 1091 GATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-C 1148 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||||||||| | ||||| |||| Sbjct 1149 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACA 1208 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || |||||||||| || |||| |||| | || || | || || || || | Sbjct 1209 ATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAA 1268 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| |||||| | || || |||||||||| | || ||| Sbjct 1269 TTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTG 1328 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | || ||| | |||| | | || |||||||||||||||||||| || || Sbjct 1329 TTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 166127 GTCTAGGTATGCGTCCATGGAT 166148 |||| ||||||||||| ||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 140 bits (154), Expect = 4e-28 Identities = 153/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 166475 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGC 166534 ||||||| || ||||| || ||||||||||| ||| ||||||||||| || || || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 166535 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCA 166594 ||||||| ||||| |||||||| | || ||||||||||| || | || | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 166595 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 166654 | |||||||||||||| || |||||||| |||||||| || | ||||| | || |||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 166655 GTGTGTTGAACACCTGGGCAGAT 166677 | | |||| || ||||| ||| Sbjct 24696 GCCTTATGAATACTTGGGCTGAT 24674 >seq748 Length=127770 Score = 105 bits (116), Expect = 8e-18 Identities = 149/208 (72%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 |||||||| ||||| ||| ||| ||| | | |||||||| || || ||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 | || ||||| || ||||||| || || | |||||| || || || | || || ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 166330 GGGGTATTTGGTGGCAGTT--TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTC 166387 || ||||| || || || | || ||||||||||| | ||||| || ||| | Sbjct 126601 GGTGTATTCGGCGG---TTCCTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTT 126545 Query 166388 TCGTTAGAGAGACGACTGAAACCGAATC 166415 | | || ||||| |||||||| ||||| Sbjct 126544 TGCTCAGGGAGACCACTGAAACTGAATC 126517 >seq3349 Length=30989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct 25084 TCCGTTC-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 25142 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 25143 GTTCGAATCCTACTTGGGGAG 25163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561167825723200