Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq9 185 3e-42 seq3095 183 9e-42 seq2645 143 8e-30 seq1688 109 2e-19 >seq9 Length=772998 Score = 185 bits (204), Expect = 3e-42 Identities = 242/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 || || ||||||||| ||||||||| | |||||||||||| | ||||| || ||||| Sbjct 515923 CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCT 515864 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | | || | || | |||||| | |||| || | ||| ||||| || |||||| Sbjct 515863 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 515804 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 ||||||| | | || || ||| || ||||| |||||| | || |||||||| Sbjct 515803 GAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTT 515744 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698 | ||||| |||||||| ||| | |||| || |||| || || ||| ||||||| | Sbjct 515743 TCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGT 515684 Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAAT 41758 ||||| || || || | || || ||||||| ||| | || ||| ||| |||||||| Sbjct 515683 ATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAAC 515624 Query 41759 ATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 || ||||||||||| ||||||||| | ||||| || Sbjct 515623 ATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 183 bits (202), Expect = 9e-42 Identities = 313/449 (70%), Gaps = 15/449 (3%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| || Sbjct 19825 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 19883 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || ||||||||||| || | | || || || || || || ||||| || || || Sbjct 19884 TTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 19943 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCA-----GGAGCCGTCGTT 41434 || || |||| || | | ||||| ||||| || |||| | || ||| | || Sbjct 19944 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATT 20003 Query 41435 CCGAGC-AGTAATGCC---ATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACT 41490 || | | | | ||| |||||| | ||||| ||||| ||||||||||| | | Sbjct 20004 CCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGT 20059 Query 41491 TGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGG 41550 |||||| ||| | ||||| |||||||| | | || | || | |||||| | |||| Sbjct 20060 TGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 20119 Query 41551 CGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTG 41610 || | ||| ||||| || |||||||||||||| | || || || ||| | || || Sbjct 20120 TGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 20179 Query 41611 GATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCC 41670 ||| |||||| || || |||||||| || ||||| |||||||| ||| | || | || Sbjct 20180 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCC 20239 Query 41671 GTTTGGACAGGGCTCTTTTTCTGATGCTA 41699 |||| || || |||||||||||||| Sbjct 20240 TATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 143 bits (158), Expect = 8e-30 Identities = 248/356 (70%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 || |||||||| | |||||||| || || | ||||| || | ||| ||| | ||| Sbjct 45766 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCC-TACCTTATTGACC--ACA 45710 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||||||||| | | || || || || || || ||||| || || Sbjct 45709 ACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGT 45651 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || || | ||||| ||||| || || || || ||| | |||| Sbjct 45650 GAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 45591 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | | |||||| | || || |||||||||||||||||||| || |||||||| Sbjct 45590 ACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAA 45531 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| || ||||| | | || | || | || ||| | |||| || | Sbjct 45530 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCT 45471 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 45470 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 140 bits (154), Expect = 9e-29 Identities = 247/356 (69%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 || |||||||| | |||||||| || || | ||||| || | ||| ||| | ||| Sbjct 1059 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCC-TACCTTATTGACC--ACA 1115 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||||||||| | | || || || || || || ||||| || || Sbjct 1116 ACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGT 1174 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || || | ||||| ||||| || | || || ||| | |||| Sbjct 1175 GAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCT 1234 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | | |||||| | || || |||||||||||||||||||| || |||||||| Sbjct 1235 ACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAA 1294 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| || ||||| | | || | || | || ||| | |||| || | Sbjct 1295 TGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCT 1354 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 1355 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 109 bits (120), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || ||||||||||| | ||||||||||||||||| || || || || ||| | | || Sbjct 24871 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 24812 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACC 42061 ||||| ||||| |||||||| |||| || ||||| |||| | || | ||| Sbjct 24811 TTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 24755 Query 42062 ATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100 ||||| |||||| | ||||||||||| || ||||||||| Sbjct 24754 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCT 24716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146194557609312