Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3095 188 2e-43 seq9 188 2e-43 seq2645 168 2e-37 seq1688 127 6e-25 >seq3095 Length=35243 Score = 188 bits (208), Expect = 2e-43 Identities = 335/483 (69%), Gaps = 17/483 (4%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 19789 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 19848 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| ||||||||| Sbjct 19849 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCA 19906 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || | Sbjct 19907 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 19966 Query 42458 ATGGCAACA-----ACATCATCTCTGGTGCC----GTCGTGCCTAGCAGTAACGCAATTG 42508 |||| |||| | || |||||||||||| || | |||| | || || | Sbjct 19967 ATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCG 20026 Query 42509 GACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCG 42568 || | || || || ||||||||| | |||| || ||| | |||||||||| Sbjct 20027 GATTGCACTTTTA----CCCTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 20082 Query 42569 GACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCG 42628 | |||||| |||| | || | |||||| | | ||| | | ||| |||| || | Sbjct 20083 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 20142 Query 42629 AATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCC 42688 | ||||||||| | ||| || || ||| | || ||||| |||||| || || || | Sbjct 20143 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 20202 Query 42689 CTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAG 42748 |||| || || || ||||| || ||| | | | || |||| ||||| |||||| | Sbjct 20203 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTG 20262 Query 42749 ATG 42751 ||| Sbjct 20263 ATG 20265 >seq9 Length=772998 Score = 188 bits (208), Expect = 2e-43 Identities = 322/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| |||| ||||| || || ||| |||| |||||||| |||| ||| ||| | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 | ||| ||| | || ||||| ||||| || |||||||||||| | | || ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 515931 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 | |||| ||||| || | || |||||| | ||||| |||||| | ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTG 42621 ||||| || |||||| |||| | || | |||||| | | ||| | | ||| || Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTAC 42681 || || || ||||||||| | | | || || ||| || ||||| |||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 515756 Query 42682 TCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCT 42741 || || ||||| | || || ||||| || ||| | | || || |||| ||||| | Sbjct 515755 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 515696 Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 || || ||||| |||||| | || || | ||||| |||||||| ||| | || ||| || Sbjct 515695 TTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAG 515636 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | || || ||||| ||||||||||| || || ||| | ||||| || Sbjct 515635 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 168 bits (186), Expect = 2e-37 Identities = 276/392 (70%), Gaps = 7/392 (2%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| ||| || || |||||| | ||| || | || |||||||| | || |||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCAC--CTGT-TTTATTGTCGCTTTC 42396 || || ||||||| |||| || | | | || || |||| |||||| |||| ||| Sbjct 45742 GGGGTTTTGATGAT-CCCTACCTTATTGA--CCACAACTTCTGTATTTATTATCGCCTTC 45686 Query 42397 ATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTG 42456 || || |||| ||| ||||| |||||||| |||||||| ||||| ||||| ||||| || Sbjct 45685 ATCGCAGCCC-TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTT 45627 Query 42457 TATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACAT 42516 ||||| ||||| || |||||||||||| | | |||| | | || ||| | ||| Sbjct 45626 TATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCAT 45567 Query 42517 TTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTAT 42576 || || | || |||||||| | |||| |||||| | |||||||| || |||||| Sbjct 45566 TTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTAT 45507 Query 42577 CAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 |||| | || | || ||| | | ||| | | ||| |||| || || |||||| Sbjct 45506 GAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 45447 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 ||| | ||| || || ||| | || ||||| Sbjct 45446 CTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 163 bits (180), Expect = 8e-36 Identities = 275/392 (70%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| ||| || || |||||| | ||| || | || |||||||| | || |||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCAC--CTGT-TTTATTGTCGCTTTC 42396 || || ||||||| |||| || | | | || || |||| |||||| |||| ||| Sbjct 1083 GGGGTTTTGATGAT-CCCTACCTTATTGA--CCACAACTTCTGTATTTATTATCGCCTTC 1139 Query 42397 ATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTG 42456 || || |||| ||| ||||| |||||||| |||||||| ||||| ||||| ||||| || Sbjct 1140 ATCGCAGCCC-TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTT 1198 Query 42457 TATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACAT 42516 ||||| ||||| || ||||||||||| | | |||| | | || ||| | ||| Sbjct 1199 TATGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCAT 1258 Query 42517 TTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTAT 42576 || || | || |||||||| | |||| |||||| | |||||||| || |||||| Sbjct 1259 TTTTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTAT 1318 Query 42577 CAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 |||| | || | || ||| | | ||| | | ||| |||| || || |||||| Sbjct 1319 GAGCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 1378 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 ||| | ||| || || ||| | || ||||| Sbjct 1379 CTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 127 bits (140), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 42995 ATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTG 43053 ||||||| ||||| || | |||||||||||||| | |||| || || ||| ||||| Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTA 24815 Query 43054 CACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGT 43113 |||||||| || |||||||| || | ||||| ||||||||| || | || | ||| Sbjct 24814 CACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGT 24758 Query 43114 ACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAAT 43173 |||||||| || ||| | |||||||| || || |||||||| | ||||||| || | Sbjct 24757 ACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGT 24698 Query 43174 CATGTCATCCCTACTTGGGCTGATA 43198 | | || |||||||||||||| Sbjct 24697 CGCCTTATGAATACTTGGGCTGATA 24673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143513321522544