Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq9 199 1e-46 seq3095 192 2e-44 seq2645 168 2e-37 seq748 105 2e-18 seq1688 104 7e-18 >seq9 Length=772998 Score = 199 bits (220), Expect = 1e-46 Identities = 325/468 (69%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 26299 AGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAA 26358 ||| ||||| ||| || ||||| ||||| || || || || ||| | | |||||| | Sbjct 515588 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAAT 515647 Query 26359 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||||||||| ||||||||| |||| || | |||||| |||||| ||||| ||||| || Sbjct 515648 CATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 515707 Query 26419 GAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAA 26478 | ||| |||| ||||| || || ||| || || | || |||| || ||||||| Sbjct 515708 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGC 515767 Query 26479 TATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGC 26538 ||||| || ||| || || | | || |||||||||| | || ||| || Sbjct 515768 AATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGC 515827 Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | ||||||||| | | ||| || | ||| || || |||||||||| ||| || Sbjct 515828 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTC 515887 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 || || | |||||||| || ||||||||||| | || | ||| || Sbjct 515888 ATCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATG-----CAATCGAGTT-------GG 515935 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 | | || || || || ||||||||||| || | ||| || || ||| |||||| | Sbjct 515936 AAAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATG 515995 Query 26719 TATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 || ||||| ||||||| | | |||||||||||||| | ||||| Sbjct 515996 AATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 516041 >seq3095 Length=35243 Score = 192 bits (212), Expect = 2e-44 Identities = 323/464 (70%), Gaps = 15/464 (3%) Strand=Plus/Minus Query 26397 CATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATA 26456 ||||| |||||| ||||| || | ||| | || ||||| || || ||| || | | Sbjct 20265 CATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAA 20206 Query 26457 GTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCC 26516 || |||| |||||||||| ||||| || | ||| || || | | || ||||||| Sbjct 20205 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 20146 Query 26517 ACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576 ||| | || ||| ||||| || | ||||||||| | | ||| || | ||| | Sbjct 20145 ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 20086 Query 26577 GTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636 | ||||||||||||| |||||| || | | ||||||||||| ||||||| || | Sbjct 20085 GACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAGTGCA 20030 Query 26637 GTCCGATTGCGTTAGAGGAGGGGACGACT----GCTCCTGA-----TATTATATTGTTTC 26687 |||||| || ||| | || | || | || || || ||| |||||||||| Sbjct 20029 ATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGTTTC 19970 Query 26688 CGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 26747 | || | ||| || || ||||| |||||||| || ||||| |||||||| || || || | Sbjct 19969 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAG 19910 Query 26748 CGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACC 26806 ||||||| || | ||||| ||| | ||| || | | |||| || ||||| | || Sbjct 19909 CGATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACA 19851 Query 26807 CCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 ||||||||||| | || |||||||| || || || || | ||| Sbjct 19850 CCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCA 19807 >seq2645 Length=47068 Score = 168 bits (186), Expect = 2e-37 Identities = 263/372 (71%), Gaps = 3/372 (1%) Strand=Plus/Plus Query 26480 ATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCT 26539 ||||| || | ||| || || | | || |||||||||| | || ||| ||| Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 26540 ACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCG 26599 || || | |||||| || | | ||| || | ||| || || |||||||||| ||| || Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 26600 TCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGG 26659 || | || |||||||||| || ||||||||||| | |||||| | ||| | || Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 26660 ACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGT 26719 | | || || || || ||||||||||| || | || || || ||||| |||||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 26720 ATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGC 26778 || ||||| |||||||| || || |||||||||||||| | ||||| ||| | ||| | Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 45712 Query 26779 TGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGT 26838 | | |||| || ||||| | ||||| |||||||| | || ||||| ||||| || Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 26839 ACTTGTAACCCA 26850 || || | ||| Sbjct 45773 GCTAGTTATCCA 45784 Score = 165 bits (182), Expect = 2e-36 Identities = 262/372 (70%), Gaps = 3/372 (1%) Strand=Plus/Minus Query 26480 ATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCT 26539 ||||| || | ||| || || | | || |||||||||| | || ||| ||| Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 26540 ACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCG 26599 || || | |||||| || | | ||| || | ||| || || |||||||||| ||| || Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 26600 TCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGG 26659 || | || |||||||||| || ||||||||||| | |||||| | ||| | || Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 26660 ACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGT 26719 | | || || || | ||||||||||| || | || || || ||||| |||||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 26720 ATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGC 26778 || ||||| |||||||| || || |||||||||||||| | ||||| ||| | ||| | Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 1113 Query 26779 TGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGT 26838 | | |||| || ||||| | ||||| |||||||| | || ||||| ||||| || Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 26839 ACTTGTAACCCA 26850 || || | ||| Sbjct 1052 GCTAGTTATCCA 1041 >seq748 Length=127770 Score = 105 bits (116), Expect = 2e-18 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| ||| || | || ||||| || ||||| ||||| || || ||||| Sbjct 126568 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 126626 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||| | || || || || | ||| |||||||| | ||||||||| |||||||||||||| Sbjct 126627 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 126686 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 || | || ||| |||| | |||||| ||||| || Sbjct 126687 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACC 126721 >seq1688 Length=72660 Score = 104 bits (114), Expect = 7e-18 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || |||||||||||||| |||||||| || | ||||| Sbjct 24707 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACC 24766 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || | || ||||||| ||| ||||| || | |||||| Sbjct 24767 TAAAGCAGTGAACCAGATCCCTATTACAGGCCAAGCAGC---CAAGAAGTGTAAAGAACG 24823 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCC 26151 ||| || ||||| ||||| || || ||||||| ||||| || || Sbjct 24824 AGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACC 24871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147691954373760