Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq9 257 2e-63 seq3095 221 1e-52 seq2645 181 1e-40 seq748 125 8e-24 seq1688 105 8e-18 >seq9 Length=772998 Score = 257 bits (284), Expect = 2e-63 Identities = 340/470 (72%), Gaps = 20/470 (4%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||| || || ||| |||| ||||||||||||| ||| || | Sbjct 516041 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCATGAGCCTATT 515984 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||||||||| | ||||| ||||| || |||||||||| || | ||| ||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTG-------CCATTTTTCCAAC 515931 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 | |||| || || || || ||| |||||| ||| |||||||||| ||||| ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 ||||||||||||| | || | || | |||||| | | || | ||| | | | Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTAT 515819 Query 155302 ---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCA 155358 |||||| ||||||||||| || | |||| || |||| ||||||||| ||||||| Sbjct 515818 ATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCA 515759 Query 155359 TACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGT 155418 | || || || || || ||||| ||||| ||| | |||| ||| | |||||||| Sbjct 515758 AATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGA 515699 Query 155419 TCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTC 155478 ||||||||||| |||||| | || |||| ||||||||| |||| |||| | || ||| Sbjct 515698 AGTTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTC 515639 Query 155479 CAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGC 155528 | | ||| ||||| ||||||||||| || || |||||| | || ||||| Sbjct 515638 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 515589 >seq3095 Length=35243 Score = 221 bits (244), Expect = 1e-52 Identities = 335/475 (71%), Gaps = 19/475 (4%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 19799 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 19858 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||| ||||| |||| Sbjct 19859 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTC 19918 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACA--- 155146 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| |||| Sbjct 19919 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 19978 Query 155147 --ACATCATCTCTGGTGCTGTT----GTCCCTAGTTCAAACGCAATTGGTCTCCACTTCT 155200 | || ||||||||||| || | |||| ||| || || || | ||||| | Sbjct 19979 TTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTT 20038 Query 155201 ATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAAC 155260 | || |||||||| ||| || ||||||||||||| |||||||| ||||||| | | Sbjct 20039 ACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGC 20094 Query 155261 TTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAAC 155317 | | || | |||||| | | || | ||| | | | |||||| ||||||||| Sbjct 20095 TAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAAC 20151 Query 155318 TTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTG 155377 || || |||||| || |||||||||||||| ||||||||| || || || || | | Sbjct 20152 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 155378 CTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 155432 |||| ||||| ||| | || | ||| | |||||||| ||| |||||||| Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq2645 Length=47068 Score = 181 bits (200), Expect = 1e-40 Identities = 271/382 (71%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || || || | || |||| ||||| || ||| | | Sbjct 45792 TCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGA 45733 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | | || | || ||| |||||||||| || || |||| Sbjct 45732 TGATCCCTACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTC 45674 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || |||||||| || | ||||| ||||| | Sbjct 45673 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATA 45614 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| | || || | || || || || |||| Sbjct 45613 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTT 45554 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||||| |||||||||||||||| | || | || Sbjct 45553 GGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTC 45494 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | || ||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 45493 TACAGTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 45437 Query 155327 GTCTTGGCATGCGTCCTTGGAT 155348 |||| || |||||||||||||| Sbjct 45436 GTCTGGGTATGCGTCCTTGGAT 45415 Score = 178 bits (196), Expect = 2e-39 Identities = 270/382 (71%), Gaps = 7/382 (2%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || || || | || |||| ||||| || ||| | | Sbjct 1033 TCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTGA 1092 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | | || | || ||| |||||||||| || || |||| Sbjct 1093 TGATCCCTACCTTATTGACCACAACTTCTGTATTTATTATCGCCTTCATCGCAGC-CCTC 1151 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || |||||||| || | ||||| ||||| | Sbjct 1152 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATA 1211 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | |||||||||| || | |||| ||| | || || | || || || || |||| Sbjct 1212 TTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAATTT 1271 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||||| |||||||||||||||| | || | || Sbjct 1272 GGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTC 1331 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | || ||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 1332 TACAGTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1388 Query 155327 GTCTTGGCATGCGTCCTTGGAT 155348 |||| || |||||||||||||| Sbjct 1389 GTCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 125 bits (138), Expect = 8e-24 Identities = 133/174 (76%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| ||| ||| ||| ||| || | || |||||||||||||| |||| |||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || ||||| ||| | ||||| ||||||| ||| || || ||||| | || ||||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 ||||| ||||| || || || ||| ||||||||| |||| ||||| || ||| Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCT 126549 >seq1688 Length=72660 Score = 105 bits (116), Expect = 8e-18 Identities = 125/169 (74%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 155675 ATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTC 155734 |||| || || ||||| | |||||||| ||||| ||||||||||| | | | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 155735 ACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAA 155794 ||||||| ||||| |||||||| | | |||||| |||||| | ||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 155795 CGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA 155843 | |||||||||||||| || |||||||| |||||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584751656291680