Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq9 219 1e-52 seq3095 208 2e-49 seq2645 185 2e-42 seq748 104 7e-18 >seq9 Length=772998 Score = 219 bits (242), Expect = 1e-52 Identities = 329/467 (70%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAAC 41015 || || || | ||| || ||||| ||||| || |||||||| ||| | | ||| |||| | Sbjct 515589 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACAATC 515648 Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCG 41075 || |||||||| || ||| |||||||||||||||||||||||||||| || ||||| Sbjct 515649 ATAAAGTTGAAAGTACCAAAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 515708 Query 41076 AATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAAT 41135 | || |||| ||||| ||||| ||| ||||| | ||||||| | ||| ||| Sbjct 515709 ATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGAAACAGGAGCTGAATTTGCAACAGCA 515768 Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCT 41195 ||||| || |||||| || | | | ||||||||||| | ||| || ||| Sbjct 515769 ATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAAGCT 515828 Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| ||||| | ||||| || | ||| || || || ||||||| ||| || Sbjct 515829 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 515888 Query 41256 TCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 || || | | |||||| |||||||| ||||| | || ||| | ||| Sbjct 515889 TCAAGAGATGCAGCTTCCTGAATTGGGTAAAAATGCAATC-----------GAG-TTGGA 515936 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || ||||| ||||||||||| || || | ||| || || ||| |||||| | Sbjct 515937 AAAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTCATGA 515996 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 || ||||| ||||||| | | |||||||| |||||||| || || Sbjct 515997 ATACCATCAATATCTATTG--GAAGCTGCGATGAAGGCGATAATAAA 516041 >seq3095 Length=35243 Score = 208 bits (230), Expect = 2e-49 Identities = 343/490 (70%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGCA-TACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATAC 41095 ||| |||||||| || ||||||| ||| || ||||| | || | || ||||| || Sbjct 20282 ATTTCTAAAGGCTGTAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAAC 20223 Query 41096 AGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 ||| ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 20222 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 20163 Query 41156 TCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAA 41215 | | | ||||||||||| | ||| || ||||| || | ||| ||||| | Sbjct 20162 ACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG 20103 Query 41216 GACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCA 41275 ||||| || | ||| || ||||| ||||||| |||||| || | | | |||||||| Sbjct 20102 AACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA 20043 Query 41276 GATTGGGTAGAAATGTAGTCCGATTGCGTTAGA----GCTCGGAACGACAGCTCCAGA-- 41329 | |||| || || | |||||| || ||| | | |||| | || ||||| Sbjct 20042 G----GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGA 19987 Query 41330 ---TATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTAT 41386 |||||||||||| || || | ||| || || ||||| |||||||| || ||||| || Sbjct 19986 TAATATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAAT 19927 Query 41387 ATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATG 41445 |||||| || || || ||||| || ||||| || || ||| | || || || | ||| | Sbjct 19926 ATCTACTGGAGGGGCAGCGATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGG 19868 Query 41446 CTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCC 41505 || ||||| | ||||| ||||| || | ||| || ||||| ||||||||||| | || Sbjct 19867 TAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCC 19808 Query 41506 AGTTACAAAA 41515 |||| || || Sbjct 19807 AGTTGCAGAA 19798 >seq2645 Length=47068 Score = 185 bits (204), Expect = 2e-42 Identities = 272/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCT 41195 ||||| || | |||||| || | | | ||||||||||| | ||| || ||| Sbjct 45415 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 45474 Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| || || | ||||| || | ||| || || || ||||||| ||| || Sbjct 45475 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 45534 Query 41256 TCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 || | || | |||||||| |||||||| ||||| | |||||| | ||| | ||| Sbjct 45535 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 45594 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || ||||| ||||||||||| || || | || || || ||||| |||||||| Sbjct 45595 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 45654 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGC 41434 || ||||| |||||||| || || |||||||| |||||||| || || ||| | || | Sbjct 45655 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 45712 Query 41435 AGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGT 41494 || | ||| | || ||||| | || |||||||| || | ||| || || || ||||| Sbjct 45713 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 45772 Query 41495 GCTAGTGACCCAGTTACAAAA 41515 |||||| | |||||| || || Sbjct 45773 GCTAGTTATCCAGTTGCAGAA 45793 Score = 181 bits (200), Expect = 3e-41 Identities = 271/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCT 41195 ||||| || | |||||| || | | | ||||||||||| | ||| || ||| Sbjct 1410 ATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 1351 Query 41196 ACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCG 41255 || || | ||| || || | ||||| || | ||| || || || ||||||| ||| || Sbjct 1350 ACACCAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCA 1291 Query 41256 TCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 || | || | |||||||| |||||||| ||||| | |||||| | ||| | ||| Sbjct 1290 TCAAATGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCACCGCAGAAGTAGGA 1231 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || ||||| | ||||||||| || || | || || || ||||| |||||||| Sbjct 1230 ATAATGGCACCAGAGAAAATATTGTTTCCATAAAGTAGAGAACCAGAAACAGGCTCACGA 1171 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGC 41434 || ||||| |||||||| || || |||||||| |||||||| || || ||| | || | Sbjct 1170 ATACCATCAATATCTACTGGAGG-GCTGCGATGAAGGCGATAATAAATACA-GAAGTTGT 1113 Query 41435 AGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGT 41494 || | ||| | || ||||| | || |||||||| || | ||| || || || ||||| Sbjct 1112 GGTCAATAAGGTAGGGATCATCAAAACCCCAAACCATCCGATGTAAAGACGATTCTCGGT 1053 Query 41495 GCTAGTGACCCAGTTACAAAA 41515 |||||| | |||||| || || Sbjct 1052 GCTAGTTATCCAGTTGCAGAA 1032 >seq748 Length=127770 Score = 104 bits (114), Expect = 7e-18 Identities = 151/209 (72%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATA 40925 ||||||||||| |||||||||| | | | |||| || ||||| | |||||| Sbjct 126517 GATTCAGTTTCAGTGGTCTCCCTGAGCAAACTAGAGGT--TACCAAGGAA-CTATGCATA 126573 Query 40926 GCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATG 40985 ||| || | | ||| || || || || || || || | || || ||||| ||| | Sbjct 126574 GCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTA 126632 Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 || |||||||| | ||| ||||| |||| ||| |||||||| || ||| |||||||||| Sbjct 126633 AGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAA 126692 Query 41046 GGCATACCATCAGAGAAAGAACCCTGACC 41074 | |||||||| ||| ||| || ||||| Sbjct 126693 GCCATACCATTAGAAAAACTTCCTTGACC 126721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143682898506552